Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G176800.1 | Wheat | cytosol | 96.69 | 94.68 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 95.98 | 93.76 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 92.2 | 90.07 |
| Os12t0161100-00 | Rice | cytosol | 63.36 | 61.05 |
| KXG23010 | Sorghum | cytosol | 65.01 | 60.57 |
| Zm00001d023480_P001 | Maize | cytosol | 57.45 | 43.47 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 30.02 | 40.97 |
| PGSC0003DMT400055045 | Potato | cytosol | 19.15 | 38.39 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 32.15 | 38.31 |
| Solyc01g007030.2.1 | Tomato | cytosol | 18.68 | 37.44 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 36.88 | 37.41 |
| KRH22633 | Soybean | cytosol, nucleus | 34.28 | 35.98 |
| KRH26691 | Soybean | cytosol | 31.21 | 34.11 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 32.62 | 33.74 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 32.39 | 33.33 |
| CDY23218 | Canola | cytosol | 31.21 | 33.33 |
| KRH72176 | Soybean | cytosol | 32.86 | 33.25 |
| CDX95337 | Canola | cytosol | 32.15 | 33.25 |
| CDX78096 | Canola | cytosol | 30.5 | 33.16 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 32.86 | 33.1 |
| KRH32856 | Soybean | cytosol | 32.86 | 33.1 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 32.86 | 33.1 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 32.39 | 33.09 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 32.15 | 33.09 |
| PGSC0003DMT400054949 | Potato | cytosol | 31.68 | 33.0 |
| Solyc01g007010.2.1 | Tomato | cytosol | 31.68 | 32.84 |
| PGSC0003DMT400055051 | Potato | cytosol | 30.5 | 32.74 |
| Solyc11g068920.1.1 | Tomato | cytosol | 31.21 | 32.67 |
| PGSC0003DMT400055050 | Potato | cytosol | 30.26 | 32.65 |
| KRH68014 | Soybean | cytosol | 32.39 | 32.62 |
| CDX75084 | Canola | cytosol | 31.21 | 32.51 |
| KRH25324 | Soybean | cytosol | 27.9 | 32.51 |
| PGSC0003DMT400050493 | Potato | cytosol | 30.97 | 32.43 |
| Bra017278.1-P | Field mustard | cytosol | 31.44 | 32.28 |
| CDY40422 | Canola | cytosol | 31.44 | 32.28 |
| CDY32070 | Canola | cytosol | 31.44 | 32.28 |
| CDY59599 | Canola | cytosol | 31.21 | 32.27 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 30.97 | 32.27 |
| CDX84168 | Canola | cytosol | 30.97 | 32.27 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 31.91 | 32.14 |
| Bra005309.1-P | Field mustard | cytosol | 29.31 | 32.04 |
| KRG96257 | Soybean | cytosol | 31.68 | 31.98 |
| Solyc01g007020.2.1 | Tomato | cytosol | 30.73 | 31.86 |
| KRH35744 | Soybean | cytosol | 31.44 | 31.74 |
| KRG96268 | Soybean | cytosol | 31.44 | 31.74 |
| Solyc01g009330.1.1 | Tomato | cytosol | 31.91 | 31.69 |
| AT2G35930.1 | Thale cress | cytosol | 30.73 | 31.63 |
| CDX84587 | Canola | cytosol | 30.5 | 31.54 |
| Bra023044.1-P | Field mustard | cytosol | 30.5 | 31.54 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 13.24 | 31.28 |
| Bra033430.1-P | Field mustard | cytosol | 31.21 | 31.13 |
| CDX79645 | Canola | cytosol | 30.02 | 31.13 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 31.21 | 30.91 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 31.21 | 30.63 |
| TraesCS2B01G471900.1 | Wheat | cytosol | 30.02 | 30.38 |
| Bra006925.1-P | Field mustard | cytosol | 31.21 | 30.34 |
| Bra012803.1-P | Field mustard | cytosol | 30.26 | 30.26 |
| PGSC0003DMT400054947 | Potato | cytosol | 21.51 | 30.13 |
| AT3G52450.1 | Thale cress | cytosol | 30.97 | 30.11 |
| PGSC0003DMT400038197 | Potato | cytosol | 31.68 | 29.52 |
| TraesCS6B01G290700.1 | Wheat | cytosol | 28.84 | 28.31 |
| PGSC0003DMT400054948 | Potato | cytosol | 18.44 | 27.37 |
| TraesCS7B01G105600.1 | Wheat | mitochondrion | 27.19 | 25.78 |
| TraesCS4B01G228700.1 | Wheat | mitochondrion | 26.24 | 25.23 |
| TraesCS6B01G268300.1 | Wheat | extracellular | 23.88 | 24.82 |
| TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 22.46 | 24.74 |
| TraesCS6B01G342800.1 | Wheat | mitochondrion | 26.24 | 24.45 |
| TraesCS2B01G323600.1 | Wheat | cytosol | 22.22 | 23.5 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 23.88 | 22.9 |
| TraesCS4B01G236200.1 | Wheat | cytosol | 24.35 | 22.44 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 32.15 | 22.01 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 22.93 | 21.41 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF30 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6B01G209000 | EnsemblPlants:TraesCS6B01G209000.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:274385900..274387171
Molecular Weight (calculated)
44715.2 Da
IEP (calculated)
8.028
GRAVY (calculated)
0.178
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: METSGGGTAQ HHFVCPISLQ PMQDPVTAPT GIFYDRRAIE RWLANGHATC PVTGRPLSLT DLTPNHTLRR LILSWHPASK VAPDVAPTLE PDDPEVAVLV
101: AKVMSPTSCP TADVLCEAAA SAAVNITARR CMVRAGVQWR VLRLFSSCGK TSSRAVMPTV EACLALLDAL DVSADELRPL LSGNHDLVDA LTHVLVTLEN
201: GTYTGGGGNT TRDSAVRLLD SVIESADVVL LEQLRPELFR AVTAVVRDRT VSPGATRAAL RALLNSCPSG NGKNRVLIAE AGAAHEAIEL ELSSWPSSPS
301: GKSRRVTELV MALLARLCAC AEGRAALVAH PAGIALVAKR ALRVSAATDT SAVRVLAAVC GRAASPEVVR EMARVGAVGK LCCMLQADCD RDVKETARAV
401: LRMHSGVWCG SPCVSAYLLS RYL
101: AKVMSPTSCP TADVLCEAAA SAAVNITARR CMVRAGVQWR VLRLFSSCGK TSSRAVMPTV EACLALLDAL DVSADELRPL LSGNHDLVDA LTHVLVTLEN
201: GTYTGGGGNT TRDSAVRLLD SVIESADVVL LEQLRPELFR AVTAVVRDRT VSPGATRAAL RALLNSCPSG NGKNRVLIAE AGAAHEAIEL ELSSWPSSPS
301: GKSRRVTELV MALLARLCAC AEGRAALVAH PAGIALVAKR ALRVSAATDT SAVRVLAAVC GRAASPEVVR EMARVGAVGK LCCMLQADCD RDVKETARAV
401: LRMHSGVWCG SPCVSAYLLS RYL
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.