Factsheet for TraesCS2B01G471900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G449900.1	Wheat	cytosol	97.61	97.61
TraesCS2A01G450300.1	Wheat	cytosol	97.13	97.36
EES11341	Sorghum	cytosol	78.47	79.61
Os04t0589700-01	Rice	cytosol	77.75	77.2
Zm00001d026040_P001	Maize	cytosol	75.12	76.77
Zm00001d002498_P001	Maize	cytosol	75.36	75.9
TraesCS6B01G290700.1	Wheat	cytosol	69.62	67.52
GSMUA_Achr3P18060_001	Banana	cytosol	46.17	50.66
PGSC0003DMT400004594	Potato	cytosol	41.63	42.75
Solyc01g080920.2.1	Tomato	cytosol	41.63	42.54
GSMUA_Achr5P13860_001	Banana	cytosol	30.38	41.91
TraesCS3B01G409400.1	Wheat	cytosol	31.1	31.18
TraesCS6B01G209000.1	Wheat	cytosol	30.38	30.02
TraesCS6B01G421400.1	Wheat	cytosol	29.43	29.29
TraesCS6B01G420600.1	Wheat	cytosol	29.43	29.29
TraesCS6B01G421900.1	Wheat	cytosol	29.19	29.05
TraesCS2B01G314500.1	Wheat	cytosol	29.43	28.54
TraesCS2B01G601300.1	Wheat	cytosol	28.47	27.87
TraesCS4B01G228700.1	Wheat	mitochondrion	27.03	25.68
TraesCS6B01G268300.1	Wheat	extracellular	24.64	25.31
TraesCS2B01G323600.1	Wheat	cytosol	23.21	24.25
TraesCS6B01G342800.1	Wheat	mitochondrion	25.84	23.79
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	21.77	23.7
TraesCS7B01G105600.1	Wheat	mitochondrion	24.88	23.32
TraesCS4B01G236200.1	Wheat	cytosol	25.12	22.88
TraesCS2B01G315100.1	Wheat	cytosol	22.73	21.54
TraesCS1B01G284200.1	Wheat	mitochondrion	22.73	20.97

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2B01G471900	EnsemblPlants:TraesCS2B01G471900.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:668377005..668378261

Molecular Weight (calculated)

45170.0 Da

IEP (calculated)

8.415

GRAVY (calculated)

0.070

Length

418 amino acids

Sequence
(BLAST)

001: MAMDESPQLF LCPISMELME DPVTVSTGVT YDRRSIERWF FKYGKTTCPA TMQRVASLDL TPNHTLKRVI ASWQDRASTS SSPSSPAGAF KPMARERLPS
101: VLAGIEGTPF KVTALKGLRL CMAGDQAARD DFVACDGIQV LGRVMAQALA ESGAGGDFSA FRTCEEAAAV LATLPLSDEE SVDLVLRPEC MRPMVALVQR
201: GSADARLHAM SILAKVSEAS GARNWTEDVD VDDMVKSLLD LLSDGASSKL SSRALDVLID VTARSRSRGG ARRGKGVVEV GAVRVLVELL PEADRHVTER
301: ALLLLKRLCK CPEGRLAFAE HGLAVAAVVR TVLRVSGLAT RLAVNVLWLV SCAARPTERV LDDMVASGGV AKLLALLQAD SSPSTKEKVA RMLRVHGAFW
401: RQYPCIPADL KDYLKFLK

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.