Factsheet for TraesCS6B01G290700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G251200.1	Wheat	cytosol	99.07	98.84
TraesCS6A01G263700.1	Wheat	cytosol	98.14	98.37
HORVU6Hr1G066870.1	Barley	cytosol	97.68	98.14
Os02t0690600-01	Rice	cytosol	84.22	85.41
Zm00001d017671_P001	Maize	cytosol	83.76	84.94
EES07426	Sorghum	cytosol	84.45	84.85
TraesCS2B01G471900.1	Wheat	cytosol	67.52	69.62
OQU80253	Sorghum	mitochondrion	34.8	68.81
OQU81292	Sorghum	mitochondrion	33.18	66.51
GSMUA_Achr3P18060_001	Banana	cytosol	44.08	49.87
GSMUA_Achr5P13860_001	Banana	cytosol	29.23	41.58
PGSC0003DMT400004594	Potato	cytosol	38.52	40.79
Solyc01g080920.2.1	Tomato	cytosol	38.28	40.34
TraesCS3B01G409400.1	Wheat	cytosol	31.09	32.13
TraesCS6B01G421900.1	Wheat	cytosol	28.31	29.05
TraesCS6B01G421400.1	Wheat	cytosol	28.31	29.05
TraesCS6B01G420600.1	Wheat	cytosol	28.31	29.05
TraesCS6B01G209000.1	Wheat	cytosol	28.31	28.84
TraesCS2B01G314500.1	Wheat	cytosol	28.07	28.07
TraesCS2B01G601300.1	Wheat	cytosol	26.91	27.17
TraesCS4B01G228700.1	Wheat	mitochondrion	27.38	26.82
TraesCS6B01G268300.1	Wheat	extracellular	24.13	25.55
TraesCS7B01G105600.1	Wheat	mitochondrion	25.99	25.11
TraesCS6B01G342800.1	Wheat	mitochondrion	25.99	24.67
TraesCS2B01G315100.1	Wheat	cytosol	25.06	24.49
TraesCS2B01G323600.1	Wheat	cytosol	22.27	24.0
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	21.35	23.96
TraesCS4B01G236200.1	Wheat	cytosol	23.43	22.0
TraesCS1B01G284200.1	Wheat	mitochondrion	22.97	21.85

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF29	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6B01G290700	EnsemblPlants:TraesCS6B01G290700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:523064793..523066088

Molecular Weight (calculated)

46607.6 Da

IEP (calculated)

5.000

GRAVY (calculated)

0.199

Length

431 amino acids

Sequence
(BLAST)

001: MDMDMEEPPH LFLCPISMEL MEEPVTVSTG VTYDRRSIER WLFSYGRTTC PATMQPLANL DLTPNHTLAR VISSWLDRGS SSSSSSSSSP STSSLSSPVH
101: ELGTPLTRML EEERLRSALG DLEETPFKVT ALKSMRSCMA GDVAMQIIFV ASGGVEAVGR VMAQALAESG AGGDFSAFTV CEEAAAVLAA LPLSDEASVG
201: LVLAPECLRP IMALLQRGSA EARLHAMDIL TKISSAGAGD HWTAGIDVDD VLKSLLELLS DEVSARLSSR ALDVLLDVVE RSPSGRAKAV EVGAVHVLVE
301: LLVVDADDRH VAERILLLLK RLCKCPEGRL AFAEHDLSVA AVARTMLRVS DLATQLAVKV LWLVSMVAQS EKVLEDMVLT GAVAKLLGLL HVESAPSTKQ
401: KTVRMVRIHG VFWRQYPCFP TDLKDYLRLL D

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.