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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d017671_P001 Maize cytosol 93.24 94.12
TraesCS6D01G251200.1 Wheat cytosol 85.31 84.72
TraesCS6B01G290700.1 Wheat cytosol 84.85 84.45
TraesCS6A01G263700.1 Wheat cytosol 84.38 84.19
HORVU6Hr1G066870.1 Barley cytosol 84.15 84.15
Os02t0690600-01 Rice cytosol 80.89 81.65
OQU80253 Sorghum mitochondrion 38.93 76.61
OQU81292 Sorghum mitochondrion 37.53 74.88
EES11341 Sorghum cytosol 64.8 67.48
GSMUA_Achr3P18060_001 Banana cytosol 43.12 48.56
GSMUA_Achr5P13860_001 Banana cytosol 28.67 40.59
PGSC0003DMT400004594 Potato cytosol 37.76 39.8
Solyc01g080920.2.1 Tomato cytosol 37.53 39.36
EES03937 Sorghum plastid 29.6 31.13
EES13136 Sorghum cytosol 29.14 29.34
EES06927 Sorghum cytosol 28.44 28.77
OQU85086 Sorghum cytosol 27.74 27.87
KXG23010 Sorghum cytosol 28.9 27.31
EES06938 Sorghum extracellular 24.71 26.04
KXG26241 Sorghum cytosol 27.74 25.76
EES05563 Sorghum mitochondrion 27.04 25.11
KXG19704 Sorghum mitochondrion 26.34 24.62
EES05205 Sorghum cytosol 25.41 24.06
OQU81548 Sorghum mitochondrion 24.94 23.94
EER92576 Sorghum mitochondrion 25.17 23.79
OQU81614 Sorghum cytosol 21.91 23.62
EER95229 Sorghum cytosol 23.78 22.22
KXG38738 Sorghum plastid 25.41 22.06
KXG22102 Sorghum mitochondrion 22.14 20.79
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1EntrezGene:8073188InterPro:ARM-likeInterPro:ARM-type_fold
UniProt:C5Y0S3EnsemblPlants:EES07426ProteinID:EES07426ProteinID:EES07426.1GO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016567GO:GO:0016740GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
PFAM:PF04564PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF29SMART:SM00504EnsemblPlantsGene:SORBI_3004G275800
SUPFAM:SSF48371SUPFAM:SSF57850UniParc:UPI0001A8622DInterPro:Ubox_domainRefSeq:XP_002454450.1InterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:61914064..61915353
Molecular Weight (calculated)
46092.2 Da
IEP (calculated)
5.193
GRAVY (calculated)
0.224
Length
429 amino acids
Sequence
(BLAST)
001: MEEPPHLFLC PISMELMDDP VTVSTGVTYD RRSIERWIFG CGRATCPATM QPLANLELTP NHTLKRVIGS WLDDRGRGST STSASSSPST SSLSSPAHEL
101: ATPLSRVLEA ERLRSALAGL EETPFKVTAL KGMRACMAGD VAMQCEFVSS GGIQAVARVM AQALAESGAG GDFSAFTACE EAAAVLAVLP LTDAASVGLL
201: LAPECMRPVM ALLQRGSAEA RLHAMDIVTK ISNAGAGDWT ACVEVDDVLK SLLELLADEV SISTRLSSRA LDVLLDVVER SRIGPTKAVE VGAVHVLVEL
301: LANADDRHDA ERILLLLKCL CKCPEGRMAF AEHDLSVAAV AKTMLRVSEL ATELAVKVLW LVSVVAPSEK VLEDMVLTGA VAKLLGLLHV ESPPATKQKT
401: VRMMRINGVF WRQYPCFPTD LRDYLRLLD
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.