CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81292	Sorghum	mitochondrion	94.95	96.28
EES07426	Sorghum	cytosol	76.61	38.93
Zm00001d017671_P001	Maize	cytosol	73.39	37.65
TraesCS6B01G290700.1	Wheat	cytosol	68.81	34.8
HORVU6Hr1G066870.1	Barley	cytosol	68.35	34.73
TraesCS6D01G251200.1	Wheat	cytosol	68.81	34.72
TraesCS6A01G263700.1	Wheat	cytosol	68.35	34.65
Os02t0690600-01	Rice	cytosol	66.06	33.88
EES11341	Sorghum	cytosol	56.88	30.1
GSMUA_Achr3P18060_001	Banana	cytosol	42.2	24.15
PGSC0003DMT400004594	Potato	cytosol	34.4	18.43
Solyc01g080920.2.1	Tomato	cytosol	33.95	18.09
EES06927	Sorghum	cytosol	28.44	14.62
EES13136	Sorghum	cytosol	28.44	14.55
EES03937	Sorghum	plastid	27.06	14.46
OQU85086	Sorghum	cytosol	27.52	14.05
KXG23010	Sorghum	cytosol	28.9	13.88
GSMUA_Achr5P13860_001	Banana	cytosol	18.35	13.2
KXG26241	Sorghum	cytosol	26.15	12.34
EES05563	Sorghum	mitochondrion	25.69	12.12
EER95229	Sorghum	cytosol	23.85	11.33
KXG19704	Sorghum	mitochondrion	23.85	11.33
EER92576	Sorghum	mitochondrion	22.94	11.01
OQU81548	Sorghum	mitochondrion	21.56	10.51
EES06938	Sorghum	extracellular	19.27	10.32
EES05205	Sorghum	cytosol	21.1	10.15
KXG22102	Sorghum	mitochondrion	20.64	9.85
KXG38738	Sorghum	plastid	21.1	9.31
OQU81614	Sorghum	cytosol	16.05	8.79

Protein Annotations

EnsemblPlants:OQU80253	EnsemblPlantsGene:SORBI_3007G101150	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR22849	PANTHER:PTHR22849:SF29	ProteinID:OQU80253	ProteinID:OQU80253.1
SEG:seg	SUPFAM:SSF48371	UniParc:UPI000B8BA5B3	UniProt:A0A1Z5R910	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr7:-:24051285..24052557

Molecular Weight (calculated)

23502.8 Da

IEP (calculated)

7.343

GRAVY (calculated)

0.215

Length

218 amino acids

Sequence
(BLAST)

001: MGLPMSSTLA RWARAAAARC ACYGCSGAQE RGSAPVSFFR ESEEAPGLSS RALDVLLDVV ERSRIGPSKA VEVGAVHVLV ELLANADDRH DAERILLLLK
101: CLCKCPEGRM AFAEHDLSVA AVAKTMLRVS ELATELAIKV LWLVSVVAPS EKVLEDMVLT GAVAKLLGLL HVESPPTTKQ KTVRMMRING VFWRQYPCFL
201: TDLRERSAAA AAGAGEEL

Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)

001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA

Arabidopsis Description

PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.