CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90557
KXG31158

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	EER90557	AT4G33940.1	21798944
AT5G09800.1	KXG31158	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016719_P001	Maize	cytosol	86.09	90.91
Os02t0540700-00	Rice	plastid	80.57	72.28
GSMUA_Achr8P30420_001	Banana	mitochondrion	42.83	71.06
OQU81548	Sorghum	mitochondrion	64.9	65.77
GSMUA_Achr6P18140_001	Banana	cytosol	48.79	54.03
GSMUA_Achr10P...	Banana	plastid	44.15	52.08
VIT_04s0044g00870.t01	Wine grape	cytosol	37.75	41.5
KRH53869	Soybean	cytosol	35.98	39.09
VIT_18s0166g00190.t01	Wine grape	plasma membrane	34.44	39.0
KRH43397	Soybean	cytosol	35.32	38.28
PGSC0003DMT400002079	Potato	cytosol	34.88	37.8
KRH59546	Soybean	cytosol	34.66	37.56
Solyc04g071030.1.1	Tomato	cytosol	34.0	36.07
Solyc11g005700.1.1	Tomato	cytosol	33.11	35.71
CDY08864	Canola	cytosol	32.89	35.56
Bra024318.1-P	Field mustard	cytosol	32.89	35.56
CDX84538	Canola	cytosol	32.67	35.32
KRH08734	Soybean	mitochondrion	32.23	35.27
PGSC0003DMT400065698	Potato	cytosol	32.67	35.24
KXG22102	Sorghum	mitochondrion	35.54	35.23
AT5G09800.1	Thale cress	cytosol	31.35	34.72
CDX75980	Canola	cytosol	32.45	34.67
KRH70331	Soybean	mitochondrion	31.13	34.64
CDX92262	Canola	cytosol	31.57	34.62
KRH36899	Soybean	cytosol	28.26	34.5
AT5G64660.1	Thale cress	cytosol	31.57	34.05
Bra022347.1-P	Field mustard	cytosol	31.79	33.96
CDX82332	Canola	cytosol	31.79	33.96
Bra001717.1-P	Field mustard	cytosol	31.35	33.49
CDX99325	Canola	cytosol	31.13	33.33
AT3G18710.1	Thale cress	cytosol	29.8	32.53
CDY71041	Canola	cytosol	28.48	31.23
Bra037568.1-P	Field mustard	cytosol	28.48	31.23
EES06938	Sorghum	extracellular	27.15	30.22
EES03937	Sorghum	plastid	27.15	30.15
OQU81614	Sorghum	cytosol	26.05	29.65
EER95229	Sorghum	cytosol	28.92	28.54
OQU85086	Sorghum	cytosol	26.27	27.87
EES06927	Sorghum	cytosol	25.61	27.36
KXG19704	Sorghum	mitochondrion	27.37	27.02
EES11341	Sorghum	cytosol	24.5	26.94
EES13136	Sorghum	cytosol	25.17	26.76
EES05563	Sorghum	mitochondrion	26.27	25.76
EES07426	Sorghum	cytosol	24.06	25.41
EER92576	Sorghum	mitochondrion	25.39	25.33
KXG26241	Sorghum	cytosol	24.28	23.81
KXG23010	Sorghum	cytosol	22.74	22.69
KXG38738	Sorghum	plastid	24.5	22.47
OQU80253	Sorghum	mitochondrion	10.15	21.1
OQU81292	Sorghum	mitochondrion	9.49	20.0

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8061028	InterPro:ARM-type_fold	UniProt:C5XU29	EnsemblPlants:EES05205
ProteinID:EES05205	ProteinID:EES05205.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF12	SMART:SM00504	EnsemblPlantsGene:SORBI_3004G169900	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001A85763
InterPro:Ubox_domain	RefSeq:XP_002452229.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:52146188..52147549

Molecular Weight (calculated)

46733.1 Da

IEP (calculated)

7.987

GRAVY (calculated)

0.091

Length

453 amino acids

Sequence
(BLAST)

001: MGRREMNGRL SAEYQGLEVK VPNLFRCPIS LDVMRSPVSL CTGVTYERAS IQRWLDSGNT TCPATMLPLP STDLVPNLTL RRLIALWAST AAPSSPSSSS
101: SSPPAASAVG PTPAAAAAEL LRRVADPGAD PCPPLRKLAA FLSDDDVDEF DKNALARASG AAETVATVLL RRSAADMEAA EAAVRVLAAV AASDCIEEES
201: KRRVAAALAA DAPSAAASLA RVLRGGASLE ARVDAARLVE SMLRNAASAR AAVAESEDLV GELIRLVGPA DDEKEKKENK NGGGVALDRQ AVAAGLSCLA
301: AIAATRRNAR ADMVRLGAVP AAVRVLEADA GSPSQALRVL EAAVGCAEGR AAVCESAGTA VPAVVSKMMK GGMGGAEAAV SVLWAVCHRY RDRRAVEAAA
401: GCEGGLTKLL LLMQSGCSAS ARQMASELLK IFRVNGKSCV AGYDSKTSHI MPF

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.