CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05205
KXG22102
OQU81548

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	EES05205	AT5G09800.1	21798944
AT4G33945.1	KXG22102	AT5G09800.1	21798944
AT4G33945.1	OQU81548	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018144_P003	Maize	cytosol	92.83	86.44
Os02t0761200-01	Rice	cytosol	82.83	82.29
TraesCS6A01G313600.1	Wheat	cytosol	81.3	81.84
TraesCS6D01G293000.1	Wheat	cytosol	81.09	81.62
TraesCS6B01G343700.1	Wheat	cytosol	80.65	81.18
HORVU6Hr1G077280.1	Barley	cytosol	79.78	73.99
GSMUA_Achr3P06810_001	Banana	cytosol	60.87	60.09
VIT_03s0063g01020.t01	Wine grape	cytosol	59.57	59.57
CDX69015	Canola	cytosol	55.65	56.39
CDX75390	Canola	cytosol	55.43	56.17
Bra011480.1-P	Field mustard	cytosol	55.22	55.95
Solyc11g044870.1.1	Tomato	cytosol	55.22	55.1
PGSC0003DMT400059061	Potato	cytosol	55.0	54.88
AT4G33945.1	Thale cress	cytosol	54.57	54.09
KRG89234	Soybean	cytosol, extracellular	19.78	49.19
KRH49769	Soybean	plastid	49.57	48.93

Protein Annotations

EnsemblPlants:KXG31158	EnsemblPlantsGene:SORBI_3004G306800	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR22895
PANTHER:PTHR22895:SF0	PFscan:PS50176	ProteinID:KXG31158	ProteinID:KXG31158.1	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0007F1BFA5	UniProt:A0A194YSE0	MapMan:13.2.5.1.3	:	:

Description

hypothetical protein

Coordinates

chr4:-:64482477..64486282

Molecular Weight (calculated)

49013.7 Da

IEP (calculated)

4.689

GRAVY (calculated)

0.002

Length

460 amino acids

Sequence
(BLAST)

001: MAIAISQEAF DAMVRENMED LGMDPDEALA DAVEALTLQC ADLSGIIKRV PGEAAAAEVS PVVRVLDELK ASHSASSGSE QDLDGLVSLL DELRGLCSSG
101: EGSENAAIAV RNGVVEALVA LCASARVQQE RLLASALKTL SSVLRDVAST EKFRQSEGPK IVMDLLKGGS ENSDLLDAGF SVVAAGSAGN EVVKESFMDL
201: KVDELILQVM KDKSKTNVQS LYDAIRVLLT PDDNRVVASQ VYGYSRRFAE IGVAEVLVNA LREQVAPSSL PSACAALKSI AVNDEICRSI SESGGIDVLL
301: QCIDEAGEQK NKVIARSCCS LLSKLAASDA NKSAIIQRGG FDRFLKLTSR FSEDPAIVQE VMSMVTVLTL RSPENAARAV ELGFGTLAIQ SMQRFPSSGQ
401: TQKQACLMIR NLVVRNPENR TKLLNDGAEK FIRKAKALHG SCKDAASSAL RDLGLDNYNA

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.