Factsheet for TraesCS6D01G293000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G274800.1
TraesCS1B01G284200.1
TraesCS1D01G274600.1
TraesCS2A01G298600.1
TraesCS2B01G315100.1
TraesCS2D01G296700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	TraesCS1A01G274800.1	AT5G09800.1	21798944
AT4G33945.1	TraesCS1B01G284200.1	AT5G09800.1	21798944
AT4G33945.1	TraesCS1D01G274600.1	AT5G09800.1	21798944
AT4G33945.1	TraesCS2A01G298600.1	AT5G09800.1	21798944
AT4G33945.1	TraesCS2B01G315100.1	AT5G09800.1	21798944
AT4G33945.1	TraesCS2D01G296700.1	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G313600.1	Wheat	cytosol	97.81	97.81
TraesCS6B01G343700.1	Wheat	cytosol	97.37	97.37
HORVU6Hr1G077280.1	Barley	cytosol	95.62	88.1
Os02t0761200-01	Rice	cytosol	83.59	82.51
KXG31158	Sorghum	cytosol	81.62	81.09
Zm00001d018144_P003	Maize	cytosol	79.65	73.68
GSMUA_Achr3P06810_001	Banana	cytosol	59.96	58.8
VIT_03s0063g01020.t01	Wine grape	cytosol	59.08	58.7
CDX69015	Canola	cytosol	56.89	57.27
Bra011480.1-P	Field mustard	cytosol	56.67	57.05
CDX75390	Canola	cytosol	56.67	57.05
AT4G33945.1	Thale cress	cytosol	56.02	55.17
PGSC0003DMT400059061	Potato	cytosol	55.36	54.88
Solyc11g044870.1.1	Tomato	cytosol	55.36	54.88
KRG89234	Soybean	cytosol, extracellular	20.57	50.81
KRH49769	Soybean	plastid	50.77	49.79

Protein Annotations

EnsemblPlants:TraesCS6D01G293000.1	EnsemblPlantsGene:TraesCS6D01G293000	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR22895
PANTHER:PTHR22895:SF0	SEG:seg	SMART:SM00185	SUPFAM:SSF48371	MapMan:13.2.5.1.3	:

Description

No Description!

Coordinates

chr6D:+:403795378..403798315

Molecular Weight (calculated)

48592.5 Da

IEP (calculated)

4.596

GRAVY (calculated)

0.066

Length

457 amino acids

Sequence
(BLAST)

001: MAIAISQEAF DDMVRENMED LGMDPDEALA DAVDALTLQG ANLSGIIRRV PGDAAAEEVN PVMRLLDELK ASSSGRSGED LDRLVSLLDE LLELCSGEGA
101: ENAAVAARNG GVEALVSLCA SAGVTQEGLL ASGLKALSSL IRDVGSTEKF RQSQGPKIVM DILKGALENS DILDGGFSVV AMASAGNEVV KDAFMDLKVD
201: ELILEVMRNK SNSKVQSVYD AIRVLLTPDD NRVVASQVYG YSRKFAEIGV AEVLVVALRE QVAPSSLPSA CAALKAIAVN EEICRSISEN GGIDVLLKCI
301: DEAGVQKNKV IAKSCCSLLS KLAGSDANKA NIIQQDGFDK FLKLASRFSE DPSVIQEVMS IVQVLTLRSP EHAARAVALG YGNLAIQTMQ KFPSSALTQK
401: QACLMIRNLV VRNPENRTIL LNEGVEKLIR KAKAIHGSCK AAATDALRDL GLDNYNA

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.