Factsheet for PGSC0003DMT400059061

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400065698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	PGSC0003DMT400065698	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g044870.1.1	Tomato	cytosol	96.96	96.96
VIT_03s0063g01020.t01	Wine grape	cytosol	65.73	65.87
CDX69015	Canola	cytosol	60.95	61.89
CDX75390	Canola	cytosol	60.3	61.23
Bra011480.1-P	Field mustard	cytosol	60.09	61.01
GSMUA_Achr3P06810_001	Banana	cytosol	61.17	60.52
AT4G33945.1	Thale cress	cytosol	60.09	59.7
KRH49769	Soybean	plastid	56.83	56.22
KRG89234	Soybean	cytosol, extracellular	22.34	55.68
Os02t0761200-01	Rice	cytosol	55.75	55.51
TraesCS6D01G293000.1	Wheat	cytosol	54.88	55.36
TraesCS6A01G313600.1	Wheat	cytosol	54.66	55.14
KXG31158	Sorghum	cytosol	54.88	55.0
TraesCS6B01G343700.1	Wheat	cytosol	54.01	54.49
Zm00001d018144_P003	Maize	cytosol	54.66	51.01
HORVU6Hr1G077280.1	Barley	cytosol	54.45	50.6
Zm00001d005332_P001	Maize	cytosol	13.45	29.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400059061	EnsemblPlantsGene:PGSC0003DMG400022938	EntrezGene:102579445	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR22895	PANTHER:PTHR22895:SF0	PGSC:PGSC0003DMG400022938	RefSeq:XP_006352081.1	SMART:SM00185	SUPFAM:SSF48371
UniParc:UPI0002960283	UniProt:M1C3R0	MapMan:13.2.5.1.3	:	:	:

Description

Armadillo repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022938]

Coordinates

chr11:+:31046754..31056435

Molecular Weight (calculated)

49820.1 Da

IEP (calculated)

4.694

GRAVY (calculated)

0.010

Length

461 amino acids

Sequence
(BLAST)

001: MAPPKSVRSI SQQAFDELVK ENIEDLGMDS TEALEDAIQT LTLQGVDLSG IVTSILGSGE ENPVIQSLEK LKELDRDWKQ GGGDETDVKE IIEWLDKLND
101: ACNVDGSGNA AIATKNGAIK LVCSICGKLG SEGLVSALKT LVSLLHDLQS TEIFRETNGP KMVMNILNNR KENLSILNSG FAVVSAAATG NEVLKEAFMN
201: LKIDELILQC LREFSRGSIP CLYDAVRVLL TSDDNRVVAS EVYGYARRFA KIGIVEALVD SLHDGIKAPS LVSASVALKA IAVNDDICRA VAENGGIDAI
301: LRCIDDSSEQ GEKVVAITCC SLLSKLAGSD INKSAIVDKD GMDKLMKLAM RFSDDPAVLH EVMSMITVLS LRSPHNAACA IEAGAGDIVI QAMQRFPESE
401: LLQRSSCFMI RNLVVRNPEN RTILLGNGIE KLIRKAKMNY KSCKNAATDA LRDLGLDNYN L

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.