CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75390	Canola	cytosol	97.14	97.14
AT4G33945.1	Thale cress	cytosol	87.89	85.99
VIT_03s0063g01020.t01	Wine grape	cytosol	65.42	64.57
PGSC0003DMT400059061	Potato	cytosol	61.89	60.95
Solyc11g044870.1.1	Tomato	cytosol	61.67	60.74
GSMUA_Achr3P06810_001	Banana	cytosol	59.03	57.51
KRH49769	Soybean	plastid	59.03	57.51
TraesCS6A01G313600.1	Wheat	cytosol	57.27	56.89
TraesCS6D01G293000.1	Wheat	cytosol	57.27	56.89
TraesCS6B01G343700.1	Wheat	cytosol	56.61	56.24
KXG31158	Sorghum	cytosol	56.39	55.65
Os02t0761200-01	Rice	cytosol	55.51	54.43
KRG89234	Soybean	cytosol, extracellular	22.03	54.05
HORVU6Hr1G077280.1	Barley	cytosol	56.61	51.81
Zm00001d018144_P003	Maize	cytosol	56.17	51.62
Zm00001d005332_P001	Maize	cytosol	16.96	36.67

Protein Annotations

EnsemblPlants:CDX69015	EnsemblPlantsGene:GSBRNA2T00130770001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	ncoils:Coil
PANTHER:PTHR22895	PANTHER:PTHR22895:SF0	ProteinID:CDX69015	ProteinID:CDX69015.1	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0004EE15A1	MapMan:13.2.5.1.3	:	:	:

Description

BnaC01g04380D

Coordinates

chrLK031789:+:2458657..2461112

Molecular Weight (calculated)

48533.4 Da

IEP (calculated)

4.772

GRAVY (calculated)

0.064

Length

454 amino acids

Sequence
(BLAST)

001: MATRAISQEA FDDLVKENVE DLGMEPSEAL EDALYTLKLQ GVDLSGIITC VPGESSVKDN PVIACLDRLK ELDDDLDEIS SLLVKLNQLC SSQESGNVAI
101: ATKHGAVELT CSICSKIKID ARSNAIVVPC LKALAVLIHD IQSTEAFRNA SGPRIVVDLI RDSGSDSDSL DAGFAVVAAA ATGNEVVKEI FMELKVDELI
201: LKVLNRESKI TIRALYDAIR VLLTPDDNRV VASQVYGYAR TFAKLGIARA LTEALQAGIG SDSLVSASIA LKSIAVNDEI CKSIAESGGI DTLLRCIDDS
301: GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKRGLDKLIK LAQRFSDDPL VIQEVMSIIS IICLRSPDHA ASAIEAGAGD LAIQAMKRFP AAAQMQRNAC
401: NMIRNIAVRN AENRKILLAN GIEKLIRNAK ANNEICRASA TDALRDLGLD NYNS

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.