CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90557
KXG31158

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	EER90557	AT4G33940.1	21798944
AT5G09800.1	KXG31158	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038280_P001	Maize	cytosol	93.65	94.69
Os05t0439400-01	Rice	plasma membrane	87.53	88.5
TraesCS1B01G284200.1	Wheat	mitochondrion	84.68	85.43
TraesCS1A01G274800.1	Wheat	mitochondrion	84.68	85.43
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	84.68	85.43
TraesCS1D01G274600.1	Wheat	mitochondrion	84.46	85.21
GSMUA_Achr5P01020_001	Banana	cytosol	38.95	44.39
OQU81548	Sorghum	mitochondrion	36.76	37.58
EES05205	Sorghum	cytosol	35.23	35.54
VIT_04s0044g00870.t01	Wine grape	cytosol	28.45	31.55
VIT_18s0166g00190.t01	Wine grape	plasma membrane	27.57	31.5
KRH70331	Soybean	mitochondrion	27.35	30.71
KRH08734	Soybean	mitochondrion	27.57	30.43
KRH53869	Soybean	cytosol	27.57	30.22
PGSC0003DMT400002079	Potato	cytosol	27.57	30.14
CDX92262	Canola	cytosol	26.91	29.78
Solyc04g071030.1.1	Tomato	cytosol	27.35	29.27
Bra022347.1-P	Field mustard	cytosol	26.91	29.01
AT3G18710.1	Thale cress	cytosol	26.26	28.92
CDX82332	Canola	cytosol	26.7	28.77
Bra001717.1-P	Field mustard	cytosol	26.7	28.77
CDX99325	Canola	cytosol	26.48	28.61
CDY71041	Canola	cytosol	25.82	28.57
Bra037568.1-P	Field mustard	cytosol	25.38	28.09
CDX75980	Canola	cytosol	26.04	28.07
CDX84538	Canola	cytosol	25.6	27.92
Solyc11g005700.1.1	Tomato	cytosol	25.6	27.86
KRH59546	Soybean	cytosol	25.38	27.75
EES06938	Sorghum	extracellular	24.51	27.52
KRH43397	Soybean	cytosol	25.16	27.51
Bra024318.1-P	Field mustard	cytosol	25.16	27.45
CDY08864	Canola	cytosol	25.16	27.45
PGSC0003DMT400065698	Potato	cytosol	25.16	27.38
KRH36899	Soybean	cytosol	21.88	26.95
OQU81614	Sorghum	cytosol	23.19	26.63
AT5G64660.1	Thale cress	cytosol	24.29	26.43
AT5G09800.1	Thale cress	cytosol	23.41	26.16
EES03937	Sorghum	plastid	22.76	25.49
EES11341	Sorghum	cytosol	22.76	25.24
OQU85086	Sorghum	cytosol	22.54	24.12
EES13136	Sorghum	cytosol	22.32	23.94
EES06927	Sorghum	cytosol	22.1	23.82
KXG19704	Sorghum	mitochondrion	23.63	23.53
KXG23010	Sorghum	cytosol	22.54	22.69
EES07426	Sorghum	cytosol	20.79	22.14
EER92576	Sorghum	mitochondrion	21.88	22.03
KXG26241	Sorghum	cytosol	22.1	21.86
EES05563	Sorghum	mitochondrion	21.88	21.64
KXG38738	Sorghum	plastid	23.19	21.46
OQU80253	Sorghum	mitochondrion	9.85	20.64
EER95229	Sorghum	cytosol	20.57	20.48
OQU81292	Sorghum	mitochondrion	8.75	18.6

Protein Annotations

Gene3D:1.25.10.110	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6P903	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	EnsemblPlants:KXG22102	ProteinID:KXG22102
ProteinID:KXG22102.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF21	SMART:SM00504
EnsemblPlantsGene:SORBI_3009G153200	SUPFAM:SSF57850	UniParc:UPI00081AE6B1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:50944346..50947868

Molecular Weight (calculated)

46863.0 Da

IEP (calculated)

8.209

GRAVY (calculated)

0.225

Length

457 amino acids

Sequence
(BLAST)

001: MDAAAIAGQQ ARRRIRPPEP LVMAAAPPTP AAFRCPISLE VMRSPVSLPT GATYDRASIQ RWLDSGHRTC PATRLPLAST DLVPNLLLRR LIHLHAATLP
101: PSPSPEEVLS QLAAADADGE PAAAEKAVRS LAAKIAPEKG KRASVASAVS ADLDSAVPAL LSFAKGGPGA GARVDAVRVL ATVAPELVSY LTGDDGTEKK
201: RDRVSMAVEA LAAVLSADGI AEEAREALVV ALLAEDLGRL VTTLLGAGAN GATVLEAILT SPVADADAKT AIADRPELFP DLVRILRDAA SPAAIRCMAA
301: AVQVRGRPAR ASMVRAGAIP ALALAVAAAP TAAAESALRL LAEAARCGDG KAAIAADAAE VAAAVMGRMI RVGPTGREAA VVALWLCCCA GGGDRRMREA
401: VASAPEAVGK LLVVMQGDCA PTTSRMAGEL LRAVRMEQEK KGMAAAYDSR TIHVMPY

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.