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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08864 Canola cytosol 89.76 89.98
Bra024318.1-P Field mustard cytosol 89.76 89.98
CDX84538 Canola cytosol 88.57 88.78
AT5G09800.1 Thale cress cytosol 70.48 72.37
VIT_04s0044g00870.t01 Wine grape cytosol 54.76 55.83
AT3G18710.1 Thale cress cytosol 55.0 55.66
KRH43397 Soybean cytosol 54.76 55.02
KRH59546 Soybean cytosol 54.29 54.55
KRH53869 Soybean cytosol 50.48 50.84
PGSC0003DMT400065698 Potato cytosol 47.14 47.14
Solyc11g005700.1.1 Tomato cytosol 46.67 46.67
KRH36899 Soybean cytosol 41.19 46.63
GSMUA_Achr8P30420_001 Banana mitochondrion 28.1 43.22
GSMUA_Achr10P... Banana plastid 33.33 36.46
GSMUA_Achr5P01020_001 Banana cytosol 33.33 34.91
TraesCS2A01G298600.1 Wheat cytosol, mitochondrion, plastid 35.48 33.79
TraesCS2B01G315100.1 Wheat cytosol 35.48 33.79
TraesCS2D01G296700.1 Wheat cytosol, mitochondrion, plastid 35.48 33.79
GSMUA_Achr6P18140_001 Banana cytosol 32.86 33.74
Zm00001d016719_P001 Maize cytosol 34.05 33.33
Zm00001d025379_P001 Maize cytosol, mitochondrion, peroxisome, plastid 34.29 32.43
Zm00001d050689_P001 Maize cytosol 33.1 32.4
OQU81548 Sorghum mitochondrion 34.29 32.21
EES05205 Sorghum cytosol 34.05 31.57
Os04t0418500-01 Rice plastid 33.81 31.49
Os02t0540700-00 Rice plastid 35.24 29.31
HORVU2Hr1G074130.1 Barley plastid 35.95 29.15
AT2G35930.1 Thale cress cytosol 25.24 25.79
AT3G52450.1 Thale cress cytosol 26.19 25.29
AT1G66160.1 Thale cress cytosol 25.24 24.59
AT3G19380.1 Thale cress cytosol, golgi, plastid 24.52 24.47
Os05t0439400-01 Rice plasma membrane 26.19 24.34
KXG22102 Sorghum mitochondrion 26.43 24.29
Zm00001d038280_P001 Maize cytosol 25.95 24.11
AT1G49780.1 Thale cress cytoskeleton, cytosol, vacuole 24.05 23.99
AT5G37490.1 Thale cress cytosol, nucleus, peroxisome 24.76 23.91
AT5G65920.1 Thale cress cytosol 25.24 23.87
HORVU1Hr1G074180.1 Barley mitochondrion, plastid 25.71 23.84
AT3G49810.1 Thale cress cytosol 25.24 23.66
TraesCS1B01G284200.1 Wheat mitochondrion 25.48 23.62
TraesCS1A01G274800.1 Wheat mitochondrion 25.48 23.62
TraesCS1D01G274600.1 Wheat mitochondrion 25.24 23.4
AT3G02840.1 Thale cress mitochondrion 20.24 22.43
AT3G11840.1 Thale cress cytosol 22.14 20.39
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10EntrezGene:836587ProteinID:AED97933.1InterPro:ARM-like
InterPro:ARM-type_foldArrayExpress:AT5G64660EnsemblPlantsGene:AT5G64660RefSeq:AT5G64660TAIR:AT5G64660RefSeq:AT5G64660-TAIR-G
EnsemblPlants:AT5G64660.1TAIR:AT5G64660.1Symbol:ATCMPG2Unigene:At.74061ProteinID:BAB11433.1EMBL:BT023419
EMBL:BT025629GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009987GO:GO:0010200GO:GO:0016567
GO:GO:0016740GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_201271.1
PFAM:PF04564PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001078
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF20UniProt:Q9FLF4SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniParc:UPI00000A4D53InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
Coordinates
chr5:-:25841913..25843555
Molecular Weight (calculated)
46770.0 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.021
Length
420 amino acids
Sequence
(BLAST)
001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.