Factsheet for HORVU2Hr1G074130.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G111110.1
HORVU6Hr1G077280.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	HORVU3Hr1G111110.1	AT4G33940.1	21798944
AT5G09800.1	HORVU6Hr1G077280.1	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G315100.1	Wheat	cytosol	83.01	97.51
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	82.63	97.05
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	82.63	97.05
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	68.34	79.73
Os04t0418500-01	Rice	plastid	69.11	79.38
OQU81548	Sorghum	mitochondrion	68.15	78.97
GSMUA_Achr8P30420_001	Banana	mitochondrion	34.56	65.57
HORVU2Hr1G123130.1	Barley	cytosol	5.02	56.52
GSMUA_Achr6P18140_001	Banana	cytosol	41.7	52.81
GSMUA_Achr10P...	Banana	plastid	38.42	51.82
VIT_04s0044g00870.t01	Wine grape	cytosol	31.66	39.81
KRH53869	Soybean	cytosol	31.47	39.09
VIT_18s0166g00190.t01	Wine grape	plasma membrane	30.12	39.0
PGSC0003DMT400002079	Potato	cytosol	30.31	37.56
KRH43397	Soybean	cytosol	30.31	37.56
CDX84538	Canola	cytosol	30.31	37.47
KRH59546	Soybean	cytosol	30.12	37.32
Bra024318.1-P	Field mustard	cytosol	30.12	37.23
CDY08864	Canola	cytosol	30.12	37.23
AT5G09800.1	Thale cress	cytosol	29.15	36.92
Solyc04g071030.1.1	Tomato	cytosol	29.92	36.3
Solyc11g005700.1.1	Tomato	cytosol	29.34	36.19
AT5G64660.1	Thale cress	cytosol	29.15	35.95
PGSC0003DMT400065698	Potato	cytosol	28.38	35.0
KRH36899	Soybean	cytosol	24.9	34.77
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	30.12	34.44
KRH08734	Soybean	mitochondrion	27.41	34.3
CDX92262	Canola	cytosol	27.03	33.9
CDX75980	Canola	cytosol	27.41	33.49
CDX82332	Canola	cytosol	27.41	33.49
KRH70331	Soybean	mitochondrion	26.25	33.42
HORVU2Hr1G076490.1	Barley	mitochondrion	5.6	33.33
Bra001717.1-P	Field mustard	cytosol	27.22	33.25
CDX99325	Canola	cytosol	27.03	33.1
Bra022347.1-P	Field mustard	cytosol	27.03	33.02
AT3G18710.1	Thale cress	cytosol	26.45	33.01
Bra037568.1-P	Field mustard	cytosol	26.06	32.69
CDY71041	Canola	cytosol	25.68	32.2
HORVU3Hr1G083500.1	Barley	cytosol	22.59	28.33
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	20.66	27.37
HORVU4Hr1G066070.1	Barley	cytosol	23.36	26.3
HORVU6Hr1G066870.1	Barley	cytosol	21.04	25.41
HORVU6Hr1G089560.1	Barley	plastid	21.62	24.83
HORVU6Hr1G089590.1	Barley	plastid	21.62	24.78
HORVU4Hr1G064070.1	Barley	mitochondrion	20.46	24.09
HORVU0Hr1G003810.1	Barley	cytosol	18.92	22.74
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	18.92	22.63
HORVU2Hr1G123050.1	Barley	cytosol	14.48	22.32
HORVU7Hr1G040790.2	Barley	plastid	20.66	21.93
HORVU6Hr1G077120.1	Barley	plastid	20.46	20.7

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A287IG46	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU2Hr1G074130
EnsemblPlants:HORVU2Hr1G074130.1	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B46682B
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287IG46]

Coordinates

chrchr2H:+:535102978..535105576

Molecular Weight (calculated)

53835.6 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.002

Length

518 amino acids

Sequence
(BLAST)

001: APLEKPETGS GRERFARARK SRALGAKTSR STTTTSVSYT TTPTSPQRSP SSLPLCCRFH ARTSPPRKNG AEQVAIAMVR KDKTTTGMRL PPQHQGLEVK
101: IPSFFRCPIS LDVMRSPVSL CTGVTYDRAS IQRWLDSGNT TCPATMLPLP STDLTPNLTL RSLISHWSAS AASCSPVAGS AAFFAGPSPA ALVRQVASSG
201: ADPSAALREL AAYLSDDDVD EFEKNALVGA GSAAETVAAV LRRKGEQISV AGVEAAVRVL AAIVALDGIE DANKRRVAAG LAVDASASAA SLARVLRGGS
301: GLEARIDAAR LAEFLLANAG ADAKVAVAES SELVTELVRL VGPVDEKGGL DKKAMDTGLS CLAAIAGSRR SARADMVRLG AVPAAARALH ATTEPSSSAK
401: ALRILESAVG CAEGRAALCK DAEQTVPAVL DKMMKSGRDG AEAAVAVLWA VCHKYKDRRA ADAAAASEGG LTRLILLLQS GCSAAARQMA LELLKIYKVN
501: AKSCLAGYDS KTTHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.