Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G070390.1 | golgi |
| HORVU3Hr1G088110.3 | golgi |
| HORVU6Hr1G077710.3 | |
| HORVU7Hr1G036470.3 | |
| HORVU7Hr1G036500.7 | |
| HORVU7Hr1G036540.3 | |
| HORVU7Hr1G036570.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G409400.1 | Wheat | cytosol | 97.34 | 96.4 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 97.34 | 96.17 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 96.85 | 95.69 |
| Os01t0865700-00 | Rice | plastid | 84.99 | 86.24 |
| EES03937 | Sorghum | plastid | 78.45 | 79.41 |
| Zm00001d042738_P001 | Maize | cytosol | 76.27 | 77.21 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 7.75 | 69.57 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.86 | 57.1 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 45.76 | 53.24 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.46 | 47.87 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.46 | 47.87 |
| KRH22633 | Soybean | cytosol, nucleus | 45.04 | 46.15 |
| KRH26691 | Soybean | cytosol | 42.37 | 45.22 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.07 | 43.96 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 43.58 | 43.8 |
| CDX75084 | Canola | cytosol | 42.86 | 43.6 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 43.34 | 43.55 |
| CDX95337 | Canola | cytosol | 43.1 | 43.52 |
| CDX78096 | Canola | cytosol | 40.92 | 43.44 |
| CDX79645 | Canola | cytosol | 42.86 | 43.38 |
| Solyc11g068920.1.1 | Tomato | cytosol | 42.37 | 43.32 |
| AT2G35930.1 | Thale cress | cytosol | 43.1 | 43.31 |
| KRH25324 | Soybean | cytosol | 38.01 | 43.25 |
| Bra005309.1-P | Field mustard | cytosol | 40.44 | 43.15 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.13 | 43.07 |
| KRH72176 | Soybean | cytosol | 43.58 | 43.06 |
| KRH32856 | Soybean | cytosol | 43.58 | 42.86 |
| CDX84587 | Canola | cytosol | 42.37 | 42.79 |
| Bra023044.1-P | Field mustard | cytosol | 42.37 | 42.79 |
| Solyc01g009330.1.1 | Tomato | cytosol | 44.07 | 42.72 |
| CDY32070 | Canola | cytosol | 42.62 | 42.72 |
| CDX84168 | Canola | cytosol | 41.89 | 42.61 |
| CDY59599 | Canola | cytosol | 42.13 | 42.54 |
| CDY40422 | Canola | cytosol | 42.37 | 42.48 |
| Bra017278.1-P | Field mustard | cytosol | 42.37 | 42.48 |
| CDY23218 | Canola | cytosol | 40.68 | 42.42 |
| KRH68014 | Soybean | cytosol | 42.86 | 42.14 |
| KRH35744 | Soybean | cytosol | 42.37 | 41.77 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 43.58 | 41.76 |
| KRG96257 | Soybean | cytosol | 42.13 | 41.53 |
| Bra012803.1-P | Field mustard | cytosol | 42.37 | 41.37 |
| KRG96268 | Soybean | cytosol | 41.89 | 41.29 |
| PGSC0003DMT400054949 | Potato | cytosol | 40.44 | 41.13 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 40.68 | 41.08 |
| Bra033430.1-P | Field mustard | cytosol | 41.89 | 40.8 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 33.17 | 40.77 |
| AT3G52450.1 | Thale cress | cytosol | 42.86 | 40.69 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 39.95 | 40.64 |
| PGSC0003DMT400055050 | Potato | cytosol | 38.5 | 40.56 |
| PGSC0003DMT400055051 | Potato | cytosol | 38.5 | 40.36 |
| PGSC0003DMT400038197 | Potato | cytosol | 44.07 | 40.09 |
| Bra006925.1-P | Field mustard | cytosol | 42.13 | 40.0 |
| Solyc01g007020.2.1 | Tomato | cytosol | 39.47 | 39.95 |
| HORVU6Hr1G089560.1 | Barley | plastid | 43.58 | 39.91 |
| HORVU6Hr1G089590.1 | Barley | plastid | 43.58 | 39.82 |
| Solyc01g007010.2.1 | Tomato | cytosol | 38.74 | 39.22 |
| PGSC0003DMT400054947 | Potato | cytosol | 28.33 | 38.74 |
| PGSC0003DMT400054948 | Potato | cytosol | 23.97 | 34.74 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 36.08 | 34.41 |
| HORVU2Hr1G076490.1 | Barley | mitochondrion | 7.02 | 33.33 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 14.04 | 32.4 |
| HORVU6Hr1G066870.1 | Barley | cytosol | 32.45 | 31.24 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 44.31 | 29.61 |
| HORVU4Hr1G064070.1 | Barley | mitochondrion | 30.02 | 28.18 |
| HORVU7Hr1G093780.1 | Barley | cytosol, endoplasmic reticulum, extracellular | 26.63 | 28.13 |
| HORVU7Hr1G040790.2 | Barley | plastid | 31.72 | 26.84 |
| HORVU4Hr1G066070.1 | Barley | cytosol | 29.3 | 26.3 |
| HORVU6Hr1G077120.1 | Barley | plastid | 31.48 | 25.39 |
| HORVU2Hr1G074130.1 | Barley | plastid | 28.33 | 22.59 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 24.7 | 22.52 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AK356997 | EMBL:AK364264 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:Armadillo | ncoils:Coil | UniProt:F2CZE1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:HORVU3Hr1G083500 | EnsemblPlants:HORVU3Hr1G083500.1 |
| InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS50176 |
| PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF66 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 |
| UniParc:UPI00020054CF | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F2CZE1]
Coordinates
chrchr3H:-:603823686..603825481
Molecular Weight (calculated)
44203.9 Da
IEP (calculated)
8.685
GRAVY (calculated)
0.169
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMAPPAEV PSYFLCPISL QLMRDPVTLP TGISYDRAAI SRWLAASATP AACSTSQRTC PVTRQPLEPE LQLTPNHTLR RLIGSWVASV SPGSDVEGEV
101: AALRPVRRDE LASLLSDAAE AQVGALRKLG ELVAECEDTR AMLESQDGVF DALSRVLTGA TACSTAREEA VGVLASLRIP EQDLVRVVSR HGNLAESLTA
201: VLRSSNLQSR AQAMRLVRSL ADVSVPAWVI GLNQELLAEV IRVVRDRVST RATKAALHAL SALCPYGRNR VKIVGAGAVP ALVELLLDEP ERRVCELALA
301: VLDRLCTCAE GRAELVAHAA GVVVLGKKVL RVSEAASERA VRVLRSVARH AATPAVLQEM AQAGVVGKLC LALRSELCGV KTKEKAHEVL KLHSRIWRSS
401: PCLSPKFLAL YPS
101: AALRPVRRDE LASLLSDAAE AQVGALRKLG ELVAECEDTR AMLESQDGVF DALSRVLTGA TACSTAREEA VGVLASLRIP EQDLVRVVSR HGNLAESLTA
201: VLRSSNLQSR AQAMRLVRSL ADVSVPAWVI GLNQELLAEV IRVVRDRVST RATKAALHAL SALCPYGRNR VKIVGAGAVP ALVELLLDEP ERRVCELALA
301: VLDRLCTCAE GRAELVAHAA GVVVLGKKVL RVSEAASERA VRVLRSVARH AATPAVLQEM AQAGVVGKLC LALRSELCGV KTKEKAHEVL KLHSRIWRSS
401: PCLSPKFLAL YPS
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.