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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra015543.1-P golgi
Bra022506.1-P
Bra037951.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G52450.1 Bra015543.1-P AT1G07000.1 23170036
AT3G52450.1 Bra015543.1-P AT1G07000.1 23170036
AT3G52450.1 Bra022506.1-P AT5G49830.2 23170036
AT3G52450.1 Bra037951.1-P AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY59599 Canola cytosol 94.02 100.0
CDX78096 Canola cytosol 89.2 99.74
Bra012803.1-P Field mustard cytosol 90.57 93.14
AT3G52450.1 Thale cress cytosol 92.64 92.64
Bra033430.1-P Field mustard cytosol 88.05 90.33
Bra005309.1-P Field mustard cytosol 72.18 81.14
Bra017278.1-P Field mustard cytosol 76.55 80.83
Bra023044.1-P Field mustard cytosol 75.86 80.68
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 56.55 59.85
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 56.32 59.61
KRH68014 Soybean cytosol 57.24 59.29
KRG96257 Soybean cytosol 56.55 58.71
KRH35744 Soybean cytosol 56.32 58.47
KRG96268 Soybean cytosol 56.32 58.47
PGSC0003DMT400055045 Potato cytosol 28.28 58.29
Solyc01g007030.2.1 Tomato cytosol 28.05 57.82
PGSC0003DMT400054949 Potato cytosol 53.79 57.64
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 23.68 57.54
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 53.33 57.14
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 53.56 56.97
PGSC0003DMT400055050 Potato cytosol 51.26 56.89
Solyc01g007020.2.1 Tomato cytosol 53.1 56.62
PGSC0003DMT400055051 Potato cytosol 51.26 56.6
Solyc01g007010.2.1 Tomato cytosol 52.87 56.37
KRH72176 Soybean cytosol 53.79 55.98
KRH32856 Soybean cytosol 54.02 55.95
GSMUA_Achr7P03220_001 Banana cytosol 39.77 55.81
PGSC0003DMT400054948 Potato cytosol 35.4 54.04
PGSC0003DMT400054947 Potato cytosol 36.55 52.65
HORVU2Hr1G123130.1 Barley cytosol 5.52 52.17
GSMUA_Achr5P01000_001 Banana cytosol 41.61 50.99
GSMUA_Achr10P... Banana cytosol 42.07 50.14
GSMUA_Achr11P... Banana cytosol 42.99 50.13
GSMUA_Achr8P30400_001 Banana cytosol 39.77 47.14
EES06927 Sorghum cytosol 43.45 44.58
Os04t0686000-01 Rice cytosol 41.84 44.07
OQU85086 Sorghum cytosol 43.22 44.03
TraesCS6D01G367100.1 Wheat cytosol 42.07 43.57
Os01t0865700-00 Rice plastid 40.69 43.49
TraesCS6D01G367600.1 Wheat cytosol 42.07 43.26
Os02t0539200-01 Rice cytosol 43.91 43.21
TraesCS6B01G421400.1 Wheat cytosol 41.61 43.1
TraesCS6B01G421900.1 Wheat cytosol 41.61 43.1
Zm00001d042738_P001 Maize cytosol 40.0 42.65
EES03937 Sorghum plastid 40.0 42.65
TraesCS6B01G420600.1 Wheat cytosol 41.15 42.62
TraesCS3D01G370000.1 Wheat cytosol 40.92 42.58
TraesCS2B01G314500.1 Wheat cytosol 42.07 42.46
TraesCS3B01G409400.1 Wheat cytosol 40.69 42.45
TraesCS6A01G382300.1 Wheat cytosol 41.15 42.42
TraesCS3A01G376900.1 Wheat cytosol 40.69 42.34
TraesCS2A01G298000.1 Wheat cytosol 41.84 42.23
HORVU3Hr1G083500.1 Barley cytosol 40.0 42.13
TraesCS2D01G296100.1 Wheat cytosol 41.38 41.76
Zm00001d016730_P001 Maize cytosol 41.84 41.74
TraesCS6A01G382800.1 Wheat cytosol 40.46 41.71
HORVU0Hr1G003810.1 Barley cytosol 41.15 41.53
HORVU6Hr1G089560.1 Barley plastid 42.53 41.02
HORVU6Hr1G089590.1 Barley plastid 42.53 40.93
EES13136 Sorghum cytosol 39.77 40.61
Zm00001d003745_P001 Maize nucleus 41.38 40.18
KXG26241 Sorghum cytosol 41.84 39.39
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 34.94 38.78
Bra038683.1-P Field mustard cytosol 35.63 34.68
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 33.1 33.72
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 32.87 33.49
TraesCS2B01G601300.1 Wheat cytosol 32.41 33.02
Bra034806.1-P Field mustard cytosol 35.17 32.76
Bra001424.1-P Field mustard cytosol 34.25 31.84
TraesCS6B01G209000.1 Wheat cytosol 30.34 31.21
TraesCS6A01G176800.1 Wheat cytosol 30.8 31.02
TraesCS6D01G167300.1 Wheat cytosol 30.57 30.72
Bra038205.1-P Field mustard cytosol 29.43 30.7
Bra022415.1-P Field mustard cytosol 29.43 30.33
Bra022417.1-P Field mustard cytosol 29.43 30.33
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 30.11 30.25
HORVU2Hr1G123050.1 Barley cytosol 22.99 29.76
Bra025442.1-P Field mustard mitochondrion 29.89 29.68
KXG23010 Sorghum cytosol 30.57 29.3
Bra014206.1-P Field mustard cytosol 28.05 28.84
Os12t0161100-00 Rice cytosol 28.97 28.7
GSMUA_Achr9P29630_001 Banana cytosol 39.77 27.99
Bra039752.1-P Field mustard cytosol 27.13 27.96
Bra024318.1-P Field mustard cytosol 25.29 26.25
Bra022347.1-P Field mustard cytosol 25.52 26.18
Bra040605.1-P Field mustard mitochondrion 22.07 25.6
Bra001067.1-P Field mustard mitochondrion 20.92 24.73
Bra001717.1-P Field mustard cytosol 23.68 24.29
Bra037568.1-P Field mustard cytosol 22.76 23.97
Bra037833.1-P Field mustard cytosol 22.99 22.57
Bra029975.1-P Field mustard cytosol 22.53 22.12
Zm00001d023480_P001 Maize cytosol 27.59 21.47
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1InterPro:ARM-likeInterPro:ARM-type_foldEnsemblPlantsGene:Bra006925
EnsemblPlants:Bra006925.1EnsemblPlants:Bra006925.1-PGO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083UniProt:M4CRT3PFAM:PF04564
PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF65SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850
UniParc:UPI0002542E31InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg::
Description
AT3G52450 (E=5e-211) PUB22 | PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase
Coordinates
chrA09:-:26213896..26215203
Molecular Weight (calculated)
49023.0 Da
IEP (calculated)
8.742
GRAVY (calculated)
-0.120
Length
435 amino acids
Sequence
(BLAST)
001: MDQEIEIPTF FLCPISLDIM KDPVIVSTGI TYDRDSIEKW LFTGKKNTCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS HGIERIPTPK PPISKSEIEK
101: LIKDSSSSHQ NQVKCLKRLR QIVSENTTNK RCLEAANVPE FLAKIVSNSV DSYNSPSPSL SSSNLNDLCQ SNMLENRFDS SRSLMDEALS LLYHLDTSET
201: ARKSLLNNKK GTNLVKTLTK IMQRGIYESR AYATFLLKKI LEVADPMQII LLERELFNEV VQILHDQISH KATKSAMQIL VIICPWGRNR HKAVEAGAIS
301: MIIELLMDET FSSERRTLEM AMVVLDMLCQ CAEGRAEFLN HCAAIAVVSK KILRVSQITS ERAVRVLLSI GRFCATPSLL QDMLQLGVVA KMCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY ASYPA
Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.