Factsheet for Bra038683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47911	Canola	cytosol	94.18	99.76
Bra034806.1-P	Field mustard	cytosol	80.31	76.87
AT3G11840.1	Thale cress	cytosol	77.85	76.32
Bra001424.1-P	Field mustard	cytosol	78.75	75.21
VIT_08s0105g00200.t01	Wine grape	cytosol	46.31	50.99
KRH72180	Soybean	cytosol	24.38	46.98
KRH68013	Soybean	cytosol	29.98	45.27
GSMUA_Achr11P...	Banana	cytosol	36.02	43.99
Solyc01g007050.1.1	Tomato	cytosol	39.15	41.57
PGSC0003DMT400054946	Potato	cytosol	38.93	41.33
Bra017278.1-P	Field mustard	cytosol	37.36	40.53
Bra023044.1-P	Field mustard	cytosol	36.69	40.1
Bra005309.1-P	Field mustard	cytosol	32.89	37.98
Bra012803.1-P	Field mustard	cytosol	34.68	36.64
Bra033430.1-P	Field mustard	cytosol	34.45	36.32
Bra006925.1-P	Field mustard	cytosol	34.68	35.63
Bra038205.1-P	Field mustard	cytosol	24.38	26.14
Bra022415.1-P	Field mustard	cytosol	24.38	25.83
Bra022417.1-P	Field mustard	cytosol	24.38	25.83
Bra014206.1-P	Field mustard	cytosol	23.94	25.3
Bra039752.1-P	Field mustard	cytosol	23.27	24.64
Bra025442.1-P	Field mustard	mitochondrion	23.94	24.43
Bra022347.1-P	Field mustard	cytosol	22.15	23.35
Bra024318.1-P	Field mustard	cytosol	21.7	23.15
Bra037568.1-P	Field mustard	cytosol	20.81	22.52
Bra001717.1-P	Field mustard	cytosol	21.25	22.41
Bra001067.1-P	Field mustard	mitochondrion	18.34	22.28
Bra040605.1-P	Field mustard	mitochondrion	18.57	22.13
Bra029975.1-P	Field mustard	cytosol	21.92	22.12
Bra037833.1-P	Field mustard	cytosol	19.69	19.86

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra038683
EnsemblPlants:Bra038683.1	EnsemblPlants:Bra038683.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4FC67	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF24	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002545423	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G11840 (E=3e-188) PUB24 | PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase

Coordinates

chrA01:+:26632776..26634470

Molecular Weight (calculated)

50033.0 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.009

Length

447 amino acids

Sequence
(BLAST)

001: MDRVDEEIEI PNYFLCPISL EIMKDPVTAV SGITYDRQSI VQWLEKVPSC PVTKQHLPLD SDLTPNHTLR RLIQHWCVEN ATRGVARIPT PRAPPGKLNI
101: VEEIKNLKKF VVEASGREET LKKLEVLAME GETNRRMMCE AGVHRSLILF VVKCTREEEE EGQHLKGHLD ESLRLLHLIG VPLNDARALL IENDQMLESL
201: TLILHQQDFI NKAYTIVLLR NLTGNASSHI VERFGAEILK GIIGFLKDVV ISSFNLTSPS VSATLQPSSS SVRSKLDRSL VIKRGVTAAL MILLETSSWS
301: RNRTILVDLG AVSELIELEI SYSGEKRTTE LVLGILSHLC CYADGRAEIL AHGGGIAIVT KRVLWVSTAA DDRALSILST LSKFSPENEV VEEMVCVGTV
401: EKLCSVLRVD CGLSLKEKAK EILRDHFDEW KRFPCINVHL HTKLLEQ

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.