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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra015543.1-P golgi
Bra022506.1-P
Bra037951.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G52450.1 Bra015543.1-P AT1G07000.1 23170036
AT3G52450.1 Bra015543.1-P AT1G07000.1 23170036
AT3G52450.1 Bra022506.1-P AT5G49830.2 23170036
AT3G52450.1 Bra037951.1-P AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006925.1-P Field mustard cytosol 93.14 90.57
AT3G52450.1 Thale cress cytosol 91.02 88.51
Bra033430.1-P Field mustard cytosol 87.94 87.74
Bra017278.1-P Field mustard cytosol 76.6 78.64
Bra005309.1-P Field mustard cytosol 71.87 78.55
Bra023044.1-P Field mustard cytosol 75.65 78.24
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 57.92 59.61
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 57.68 59.37
KRH68014 Soybean cytosol 57.68 58.1
KRG96257 Soybean cytosol 56.97 57.52
KRG96268 Soybean cytosol 56.74 57.28
KRH35744 Soybean cytosol 56.74 57.28
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 24.11 56.98
PGSC0003DMT400054949 Potato cytosol 54.61 56.9
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 54.61 56.48
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 53.9 56.16
Solyc01g007030.2.1 Tomato cytosol 27.9 55.92
PGSC0003DMT400055045 Potato cytosol 27.9 55.92
PGSC0003DMT400055050 Potato cytosol 51.77 55.87
Solyc01g007020.2.1 Tomato cytosol 53.66 55.64
PGSC0003DMT400055051 Potato cytosol 51.77 55.58
KRH72176 Soybean cytosol 54.85 55.5
GSMUA_Achr7P03220_001 Banana cytosol 40.43 55.16
Solyc01g007010.2.1 Tomato cytosol 53.19 55.15
KRH32856 Soybean cytosol 54.61 55.0
PGSC0003DMT400054948 Potato cytosol 35.7 52.98
HORVU2Hr1G123130.1 Barley cytosol 5.67 52.17
PGSC0003DMT400054947 Potato cytosol 37.12 51.99
GSMUA_Achr5P01000_001 Banana cytosol 42.55 50.7
GSMUA_Achr10P... Banana cytosol 43.03 49.86
GSMUA_Achr11P... Banana cytosol 43.5 49.33
GSMUA_Achr8P30400_001 Banana cytosol 40.9 47.14
Os04t0686000-01 Rice cytosol 43.26 44.31
Os01t0865700-00 Rice plastid 41.61 43.24
EES03937 Sorghum plastid 41.37 42.89
EES06927 Sorghum cytosol 42.79 42.69
Zm00001d042738_P001 Maize cytosol 41.13 42.65
OQU85086 Sorghum cytosol 42.79 42.39
HORVU3Hr1G083500.1 Barley cytosol 41.37 42.37
TraesCS3D01G370000.1 Wheat cytosol 41.84 42.34
TraesCS3B01G409400.1 Wheat cytosol 41.61 42.21
TraesCS6D01G367100.1 Wheat cytosol 41.84 42.14
TraesCS3A01G376900.1 Wheat cytosol 41.61 42.11
TraesCS6D01G367600.1 Wheat cytosol 41.84 41.84
TraesCS6B01G421900.1 Wheat cytosol 41.37 41.67
TraesCS2B01G314500.1 Wheat cytosol 42.32 41.53
TraesCS6B01G421400.1 Wheat cytosol 41.13 41.43
Os02t0539200-01 Rice cytosol 43.26 41.4
TraesCS2A01G298000.1 Wheat cytosol 42.08 41.3
TraesCS6B01G420600.1 Wheat cytosol 40.9 41.19
EES13136 Sorghum cytosol 41.37 41.08
TraesCS6A01G382300.1 Wheat cytosol 40.9 41.0
TraesCS2D01G296100.1 Wheat cytosol 41.61 40.84
HORVU0Hr1G003810.1 Barley cytosol 41.37 40.6
Zm00001d016730_P001 Maize cytosol 41.61 40.37
TraesCS6A01G382800.1 Wheat cytosol 40.19 40.28
HORVU6Hr1G089560.1 Barley plastid 42.55 39.91
HORVU6Hr1G089590.1 Barley plastid 42.55 39.82
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 36.41 39.29
Zm00001d003745_P001 Maize nucleus 40.9 38.62
KXG26241 Sorghum cytosol 40.9 37.45
Bra038683.1-P Field mustard cytosol 36.64 34.68
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 34.04 33.72
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 33.81 33.49
TraesCS2B01G601300.1 Wheat cytosol 33.57 33.26
Bra034806.1-P Field mustard cytosol 35.93 32.55
Bra001424.1-P Field mustard cytosol 35.46 32.05
HORVU2Hr1G123050.1 Barley cytosol 24.11 30.36
TraesCS6B01G209000.1 Wheat cytosol 30.26 30.26
Bra038205.1-P Field mustard cytosol 29.79 30.22
TraesCS6A01G176800.1 Wheat cytosol 30.73 30.09
TraesCS6D01G167300.1 Wheat cytosol 30.73 30.02
Bra022415.1-P Field mustard cytosol 29.79 29.86
Bra022417.1-P Field mustard cytosol 29.79 29.86
Bra025442.1-P Field mustard mitochondrion 30.73 29.68
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 30.26 29.56
Bra014206.1-P Field mustard cytosol 29.08 29.08
KXG23010 Sorghum cytosol 31.21 29.07
Os12t0161100-00 Rice cytosol 29.55 28.47
Bra039752.1-P Field mustard cytosol 27.9 27.96
GSMUA_Achr9P29630_001 Banana cytosol 39.48 27.02
Bra024318.1-P Field mustard cytosol 26.71 26.97
Bra022347.1-P Field mustard cytosol 26.48 26.42
Bra040605.1-P Field mustard mitochondrion 23.4 26.4
Bra001067.1-P Field mustard mitochondrion 22.7 26.09
Bra001717.1-P Field mustard cytosol 26.0 25.94
Bra037568.1-P Field mustard cytosol 24.35 24.94
Bra037833.1-P Field mustard cytosol 24.11 23.02
Bra029975.1-P Field mustard cytosol 23.88 22.8
Zm00001d023480_P001 Maize cytosol 27.66 20.93
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1InterPro:ARM-likeInterPro:ARM-type_foldEnsemblPlantsGene:Bra012803
EnsemblPlants:Bra012803.1EnsemblPlants:Bra012803.1-PGO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083UniProt:M4D8J3PFAM:PF04564
PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF65SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850
UniParc:UPI00025407C6InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg::
Description
AT3G52450 (E=3e-130) PUB22 | PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase
Coordinates
chrA03:-:22146466..22147737
Molecular Weight (calculated)
47551.2 Da
IEP (calculated)
8.275
GRAVY (calculated)
-0.052
Length
423 amino acids
Sequence
(BLAST)
001: MDQEIDIPCF FLCPISLDIM KDPVIVSTGI TYDRDNIEKW LFTGKNNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIATPK PLISKSEIEK
101: LIKDSSSSYQ NQVKCLKRLR QIVSENPTNK RCLEAAGVPE FLANIVSNSV DTSNDLCQSN MLENRFDSSR SLMDEALSIL YHLDTSEEAR KSLLNNKKGT
201: NLVMTLTKIM QRGNYESRAY AAFLLKKILE VADPMQIILL ERELFNEVVQ ILSDQISHKA TTSAMQILVI ICPWGRNRHK AVAAGAVSMI IELLMDETFS
301: SERRNSEMAM VVLDMLCQCA EGRAEFLNHG AAIAVVSKKI LRVSQITSER AVRVLLSIGR FCATPCLLQE MLQLGVVAKM CLVLQVSCGN KTKEKAKELL
401: KLHARVWRES PCVPRNLYAS FPA
Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.