Factsheet for Os12t0161100-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827500-01	golgi
Os01t0827600-01	golgi
Os02t0758000-01
Os05t0473500-01	golgi
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Os02t0758000-01	AT4G25200.1	21798944
AT2G35930.1	Os06t0219500-00	AT4G25200.1	21798944
AT3G52450.1	Os01t0827500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827600-01	AT1G07000.1	23170036
AT3G52450.1	Os05t0473500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827600-01	AT1G07000.1	23170036
AT3G52450.1	Os05t0473500-01	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23010	Sorghum	cytosol	66.06	63.88
TraesCS6B01G209000.1	Wheat	cytosol	61.05	63.36
TraesCS6D01G167300.1	Wheat	cytosol	61.96	62.82
TraesCS6A01G176800.1	Wheat	cytosol	61.73	62.73
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	60.36	61.2
Zm00001d023480_P001	Maize	cytosol	58.31	45.8
GSMUA_Achr7P03220_001	Banana	cytosol	28.02	39.68
Os01t0865700-00	Rice	plastid	33.94	36.61
GSMUA_Achr5P01000_001	Banana	cytosol	29.39	36.34
Os04t0686000-01	Rice	cytosol	33.71	35.84
PGSC0003DMT400055045	Potato	cytosol	15.95	33.18
Solyc01g007030.2.1	Tomato	cytosol	15.95	33.18
KRH22633	Soybean	cytosol, nucleus	30.3	33.0
CDX95337	Canola	cytosol	30.07	32.27
CDY23218	Canola	cytosol	28.93	32.07
CDX84168	Canola	cytosol	29.39	31.77
CDY32070	Canola	cytosol	29.61	31.55
CDY40422	Canola	cytosol	29.61	31.55
Bra017278.1-P	Field mustard	cytosol	29.61	31.55
CDX75084	Canola	cytosol	29.16	31.53
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	29.39	31.39
CDX78096	Canola	cytosol	27.79	31.36
CDX84587	Canola	cytosol	29.16	31.3
Bra023044.1-P	Field mustard	cytosol	29.16	31.3
AT2G35930.1	Thale cress	cytosol	29.16	31.14
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	29.16	31.14
Os02t0690600-01	Rice	cytosol	30.07	31.06
KRH26691	Soybean	cytosol	27.33	31.01
Bra005309.1-P	Field mustard	cytosol	27.11	30.75
CDX79645	Canola	cytosol	28.47	30.64
KRH25324	Soybean	cytosol	25.28	30.58
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	28.47	30.56
CDY59599	Canola	cytosol	28.47	30.56
VIT_06s0009g00320.t01	Wine grape	cytosol	28.7	30.43
Os04t0589700-01	Rice	cytosol	29.16	30.4
Bra033430.1-P	Field mustard	cytosol	29.16	30.19
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	12.3	30.17
Os02t0539200-01	Rice	cytosol	30.3	30.09
PGSC0003DMT400054949	Potato	cytosol	27.79	30.05
KRH68014	Soybean	cytosol	28.47	29.76
KRH72176	Soybean	cytosol	28.25	29.67
Solyc01g007010.2.1	Tomato	cytosol	27.56	29.66
Bra012803.1-P	Field mustard	cytosol	28.47	29.55
Solyc11g068920.1.1	Tomato	cytosol	27.11	29.46
PGSC0003DMT400055051	Potato	cytosol	26.42	29.44
PGSC0003DMT400055050	Potato	cytosol	26.2	29.34
KRH32856	Soybean	cytosol	28.02	29.29
PGSC0003DMT400050493	Potato	cytosol	26.88	29.21
KRG96257	Soybean	cytosol	27.79	29.12
KRH35744	Soybean	cytosol	27.79	29.12
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	26.88	29.06
AT3G52450.1	Thale cress	cytosol	28.7	28.97
Bra006925.1-P	Field mustard	cytosol	28.7	28.97
KRG96268	Soybean	cytosol	27.56	28.88
Solyc01g007020.2.1	Tomato	cytosol	26.65	28.68
Solyc01g009330.1.1	Tomato	cytosol	27.79	28.64
PGSC0003DMT400054947	Potato	cytosol	18.91	27.48
PGSC0003DMT400038197	Potato	cytosol	27.56	26.65
PGSC0003DMT400054948	Potato	cytosol	16.4	25.26
Os02t0548700-00	Rice	cytosol, extracellular, plastid	23.69	24.94
Os06t0248500-00	Rice	mitochondrion	24.6	23.84
Os04t0437300-01	Rice	cytosol	22.78	23.47
Os02t0738200-01	Rice	mitochondrion	23.46	22.59
Os03t0240600-01	Rice	plastid	22.78	22.47
Os03t0232600-01	Rice	cytosol	22.55	21.57
Os04t0418500-01	Rice	plastid	22.1	21.51
Os05t0439400-01	Rice	plasma membrane	21.41	20.8
GSMUA_Achr9P29630_001	Banana	cytosol	28.93	20.55
Os02t0540700-00	Rice	plastid	22.55	19.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4351568	UniProt:A0A0P0Y7A8	ProteinID:BAT15989.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	EnsemblPlantsGene:Os12g0161100
EnsemblPlants:Os12t0161100-00	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF30	SMART:SM00504
SUPFAM:SSF57850	UniParc:UPI000393C4F4	InterPro:Ubox_domain	RefSeq:XP_015618963.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

plant U-box-containing protein 37, U-box protein 37Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0161100-00)

Coordinates

chr12:+:3068752..3070072

Molecular Weight (calculated)

46073.4 Da

IEP (calculated)

7.036

GRAVY (calculated)

0.133

Length

439 amino acids

Sequence
(BLAST)

001: MEMEYGTPQH FMCPISLQPM QDPVTSPTGI SYDRRAIHRW LAAGHSSCPV TGHPLSLSDL TPNLTLRRLI HSWHHSTTTP FPVERSTPSP PPLREVDDDD
101: VVERLVMEME GGGGGSWCPP SCDLLREAAA VAAGSGVARR RMVGAGVLRR VLRLVVWCGG RGSSSGEAAV MVEMFDACLA LFHALDVSAD ELRPLVADGH
201: DLVDAVTRVM ATLEAGDANA TRARESAVRL LEAVTEAADA PVLERLSPEF FSAATAVVRD RGAVSPGAAR AAVRALANAC RARASGACRN RALAVDAGAA
301: REAIELELDA WSSPQAPGGR RATEAVMALL AELCACAEGR AAVASHPAGI TVVARRVLRV SAAADACAVR VLAAVAGRAA SPEVLREMAR VGAVGKLCCV
401: LQAECDAGVK EAARAVLRMH SGVWSGSPCV SAYLLSRYL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.