Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009330.1.1 | Tomato | cytosol | 88.99 | 94.84 |
| PGSC0003DMT400050493 | Potato | cytosol | 62.11 | 69.8 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 59.03 | 64.73 |
| KRH22633 | Soybean | cytosol, nucleus | 54.85 | 61.79 |
| KRH26691 | Soybean | cytosol | 52.2 | 61.24 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.17 | 60.87 |
| PGSC0003DMT400055045 | Potato | cytosol | 26.65 | 57.35 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 38.33 | 56.13 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 49.78 | 55.66 |
| KRH25324 | Soybean | cytosol | 44.49 | 55.65 |
| PGSC0003DMT400054949 | Potato | cytosol | 49.56 | 55.42 |
| PGSC0003DMT400055050 | Potato | cytosol | 47.8 | 55.36 |
| PGSC0003DMT400055051 | Potato | cytosol | 48.02 | 55.33 |
| GSMUA_Achr10P... | Banana | cytosol | 42.73 | 53.15 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 42.95 | 53.13 |
| PGSC0003DMT400054948 | Potato | cytosol | 32.82 | 52.28 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 40.31 | 51.55 |
| PGSC0003DMT400054947 | Potato | cytosol | 33.92 | 50.99 |
| GSMUA_Achr11P... | Banana | cytosol | 41.63 | 50.67 |
| Os04t0686000-01 | Rice | cytosol | 40.31 | 44.31 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 40.09 | 44.07 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 40.53 | 44.02 |
| PGSC0003DMT400038196 | Potato | cytosol | 40.53 | 44.02 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 40.31 | 43.88 |
| Os01t0865700-00 | Rice | plastid | 39.21 | 43.73 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 39.87 | 43.3 |
| EES06927 | Sorghum | cytosol | 40.31 | 43.16 |
| OQU85086 | Sorghum | cytosol | 40.53 | 43.09 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 39.43 | 42.62 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 39.43 | 42.42 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 39.21 | 42.08 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 39.87 | 42.0 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 38.77 | 41.9 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 38.77 | 41.9 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 38.77 | 41.9 |
| Os02t0539200-01 | Rice | cytosol | 40.75 | 41.86 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 39.65 | 41.76 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 38.77 | 41.71 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 39.43 | 41.53 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 39.21 | 41.3 |
| PGSC0003DMT400015179 | Potato | cytosol | 36.34 | 40.94 |
| EES03937 | Sorghum | plastid | 36.78 | 40.93 |
| Zm00001d042738_P001 | Maize | cytosol | 36.78 | 40.93 |
| EES13136 | Sorghum | cytosol | 38.33 | 40.85 |
| Zm00001d016730_P001 | Maize | cytosol | 38.33 | 39.91 |
| HORVU6Hr1G089560.1 | Barley | plastid | 39.43 | 39.69 |
| HORVU6Hr1G089590.1 | Barley | plastid | 39.43 | 39.6 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 33.92 | 39.29 |
| Zm00001d003745_P001 | Maize | nucleus | 37.67 | 38.17 |
| PGSC0003DMT400054946 | Potato | cytosol | 34.58 | 37.29 |
| KXG26241 | Sorghum | cytosol | 37.44 | 36.8 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 32.82 | 34.89 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 32.38 | 34.43 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 32.16 | 34.19 |
| PGSC0003DMT400004594 | Potato | cytosol | 29.3 | 32.68 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 29.52 | 31.68 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 29.96 | 31.48 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 29.74 | 31.18 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 29.74 | 31.18 |
| PGSC0003DMT400075778 | Potato | mitochondrion | 29.96 | 30.77 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 22.69 | 30.65 |
| PGSC0003DMT400073836 | Potato | cytosol | 27.75 | 30.07 |
| PGSC0003DMT400058621 | Potato | cytosol, mitochondrion | 29.3 | 29.49 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 39.87 | 29.29 |
| PGSC0003DMT400066588 | Potato | cytosol | 26.21 | 28.67 |
| KXG23010 | Sorghum | cytosol | 28.63 | 28.63 |
| Os12t0161100-00 | Rice | cytosol | 26.65 | 27.56 |
| PGSC0003DMT400065698 | Potato | cytosol | 22.69 | 24.52 |
| PGSC0003DMT400012566 | Potato | cytosol | 23.57 | 23.83 |
| PGSC0003DMT400002079 | Potato | cytosol | 21.81 | 23.68 |
| PGSC0003DMT400060272 | Potato | cytosol | 20.04 | 22.52 |
| Zm00001d023480_P001 | Maize | cytosol | 26.65 | 21.65 |
Protein Annotations
| EntrezGene:102594408 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 |
| UniProt:M1B6H0 | PFAM:PF04564 | EnsemblPlantsGene:PGSC0003DMG400014733 | PGSC:PGSC0003DMG400014733 | EnsemblPlants:PGSC0003DMT400038197 | PFscan:PS51698 |
| PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00029484BF |
| InterPro:Ubox_domain | RefSeq:XP_015158571.1 | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
U box [Source:PGSC_GENE;Acc:PGSC0003DMG400014733]
Coordinates
chr1:-:6638770..6640134
Molecular Weight (calculated)
51354.9 Da
IEP (calculated)
8.034
GRAVY (calculated)
-0.066
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVEVPDYF LCPISMQLMR DPVTTSTGIT YDRENIEKWL FKCKNTTCPI TKQELLTMDL TPNHTLRRVI QSWCIMNSSH GVERIPTPKS QVTKSYVLKL
101: LKQAMQSQEM QLSCLRKLKS IVHASESNKK CLESCEVVDF LASIIMKQEM TFIQDSEFRI SGRDTLLQKV VPSDIVSPKD SESYKLSCDN SQTPLVLEYF
201: TTKTSDEALD ILFHLNPSDE TLKKLISKDN GDELFLDSLL YFLKCGNYQS RDYAIMLLKS AFNVADPCQL IGAKQEYFKE ILLFLNNKLI SQQATKASLK
301: LLVELCPWGR NRIKAIEVGA ISTLIELLID TIERRSCELI LTILHQLCSC AEGRAELLNH GAGIAIISKK VLRVSQVASD RGVRILCSIS KFSATCKVLQ
401: EMLQVGVVSK LCLVIQVDSC SKTKEKAKEI LRLHSRVWRD SSCLPPQLLS SYPS
101: LKQAMQSQEM QLSCLRKLKS IVHASESNKK CLESCEVVDF LASIIMKQEM TFIQDSEFRI SGRDTLLQKV VPSDIVSPKD SESYKLSCDN SQTPLVLEYF
201: TTKTSDEALD ILFHLNPSDE TLKKLISKDN GDELFLDSLL YFLKCGNYQS RDYAIMLLKS AFNVADPCQL IGAKQEYFKE ILLFLNNKLI SQQATKASLK
301: LLVELCPWGR NRIKAIEVGA ISTLIELLID TIERRSCELI LTILHQLCSC AEGRAELLNH GAGIAIISKK VLRVSQVASD RGVRILCSIS KFSATCKVLQ
401: EMLQVGVVSK LCLVIQVDSC SKTKEKAKEI LRLHSRVWRD SSCLPPQLLS SYPS
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.