Factsheet for PGSC0003DMT400012566

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077610.2.1	Tomato	cytosol	91.54	98.09
VIT_18s0001g08790.t01	Wine grape	cytosol	77.28	76.77
GSMUA_Achr8P04940_001	Banana	cytosol	66.37	68.98
GSMUA_Achr2P08620_001	Banana	cytosol	66.37	68.66
KRH52124	Soybean	cytosol	63.03	66.59
KRH61438	Soybean	cytosol	62.14	66.11
GSMUA_Achr3P25750_001	Banana	cytosol	62.81	65.73
KRH05554	Soybean	cytosol	60.8	65.16
KRG88755	Soybean	cytosol	61.25	63.95
Zm00001d019807_P001	Maize	extracellular	13.36	63.83
GSMUA_Achr4P07400_001	Banana	cytosol	56.35	58.29
EER95229	Sorghum	cytosol	59.02	57.73
Zm00001d028294_P001	Maize	cytosol	58.57	57.3
HORVU4Hr1G066070.1	Barley	cytosol	58.57	57.17
Os03t0232600-01	Rice	cytosol	58.13	56.86
Zm00001d048008_P001	Maize	cytosol	58.35	56.59
TraesCS4D01G237600.1	Wheat	cytosol	57.46	56.21
TraesCS4A01G060800.1	Wheat	cytosol	57.46	56.21
TraesCS4B01G236200.1	Wheat	cytosol	57.24	55.99
Zm00001d000044_P001	Maize	cytosol	22.72	44.16
PGSC0003DMT400050493	Potato	cytosol	24.5	27.23
PGSC0003DMT400065698	Potato	cytosol	25.39	27.14
PGSC0003DMT400066588	Potato	cytosol	24.72	26.75
PGSC0003DMT400054949	Potato	cytosol	23.61	26.11
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	23.39	25.86
PGSC0003DMT400054948	Potato	cytosol	16.04	25.26
PGSC0003DMT400002079	Potato	cytosol	23.39	25.12
PGSC0003DMT400073836	Potato	cytosol	23.16	24.82
PGSC0003DMT400055050	Potato	cytosol	21.38	24.49
PGSC0003DMT400075778	Potato	mitochondrion	24.05	24.43
PGSC0003DMT400055051	Potato	cytosol	20.94	23.86
PGSC0003DMT400038196	Potato	cytosol	22.05	23.68
PGSC0003DMT400038197	Potato	cytosol	23.83	23.57
PGSC0003DMT400060272	Potato	cytosol	20.94	23.27
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	23.16	23.06
PGSC0003DMT400004594	Potato	cytosol	20.71	22.85
PGSC0003DMT400054946	Potato	cytosol	20.71	22.09
PGSC0003DMT400055045	Potato	cytosol	10.24	21.8
PGSC0003DMT400015179	Potato	cytosol	17.59	19.6
PGSC0003DMT400054947	Potato	cytosol	13.14	19.54

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102584974	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M1A1F1	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400004911	PGSC:PGSC0003DMG400004911
EnsemblPlants:PGSC0003DMT400012566	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002969A34	InterPro:Ubox_domain	RefSeq:XP_006356848.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

E3 ubiquitin ligase PUB14 [Source:PGSC_GENE;Acc:PGSC0003DMG400004911]

Coordinates

chr4:-:66760779..66763460

Molecular Weight (calculated)

48966.4 Da

IEP (calculated)

7.370

GRAVY (calculated)

0.167

Length

449 amino acids

Sequence
(BLAST)

001: MPMYVPSRGR VEEFDVGGGG QVLDLETAVK DGILGGGGGV VVHGGAIEKK LSLRKMMEEL NSIEVPSVFI CPISLEPMQD PVTLCTGQTY ERSNILKWFS
101: LGHFTCPTTM QELWDDSITP NSTLHQLIYS WFSQKYLAMK KRSEDVQGRV LEILETLKKV KGEARVQALK ELRQVVTAHD SAKKTVTNNS GVSLITSLLG
201: PFTKHVVASE AIGILVHLDL NSDGKANLMQ PNRISLMVDT LNEGSIDTKI NCTKLLELLM EGKDSECEVL SSLSLFVGLL RIIKDKRHPN GVLSGLRLLK
301: LISSHESLRN SIVGIGAIPQ LVEVLPNLNA ECLELALVIL EALSTLPEGA LALMDCRSTI PNVVKLLMKV SESCTQFALS ILWAVCKLAP EKCSSVAVEA
401: GLAAKLLLVI QSGCNPVLKQ RSAELLKLCS LNYSETIFIS KCKLTKTMQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.