Factsheet for PGSC0003DMT400015179

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074140.1.1	Tomato	cytosol	95.29	91.43
PGSC0003DMT400038196	Potato	cytosol	67.74	65.31
VIT_06s0009g00370.t01	Wine grape	cytosol	52.11	51.85
KRG88869	Soybean	cytosol	47.64	46.04
KRH25323	Soybean	cytosol	46.15	46.04
PGSC0003DMT400055045	Potato	cytosol	23.82	45.5
KRH22634	Soybean	cytosol	47.15	45.02
KRH26690	Soybean	cytosol	47.39	44.73
PGSC0003DMT400055051	Potato	cytosol	41.19	42.13
PGSC0003DMT400055050	Potato	cytosol	40.94	42.09
GSMUA_Achr11P...	Banana	cytosol	37.97	41.8
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	40.69	40.39
PGSC0003DMT400054946	Potato	cytosol	42.18	40.38
PGSC0003DMT400054949	Potato	cytosol	39.95	39.66
PGSC0003DMT400050493	Potato	cytosol	38.21	38.12
PGSC0003DMT400054947	Potato	cytosol	28.04	37.42
PGSC0003DMT400038197	Potato	cytosol	40.94	36.34
PGSC0003DMT400054948	Potato	cytosol	24.07	34.04
PGSC0003DMT400004594	Potato	cytosol	25.56	25.31
PGSC0003DMT400075778	Potato	mitochondrion	27.05	24.66
PGSC0003DMT400073836	Potato	cytosol	24.57	23.63
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	26.05	23.28
PGSC0003DMT400066588	Potato	cytosol	23.08	22.41
PGSC0003DMT400065698	Potato	cytosol	21.34	20.48
PGSC0003DMT400002079	Potato	cytosol	20.35	19.62
PGSC0003DMT400060272	Potato	cytosol	19.11	19.06
PGSC0003DMT400012566	Potato	cytosol	19.6	17.59

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M1A5K8	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400005928	PGSC:PGSC0003DMG400005928	EnsemblPlants:PGSC0003DMT400015179
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF104	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002951763	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005928]

Coordinates

chr6:+:54726206..54727547

Molecular Weight (calculated)

45731.4 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.046

Length

403 amino acids

Sequence
(BLAST)

001: MKDPVTTVTG ITYDRENIET WLLMAEENAY TCPVTKQILS RDTALLTPNH MLGKFIRSWT ICNAEKGIEQ IPSPKYPLNK SHVIRLIRQV KNHDLYLEAL
101: RKMVTMISEN EENRKCLDEG GAIKAMVLFI LRSFKEGELI MGIEEALRIF HLVWRPTHEN KQLVKENHDL IEAILWILKS REMCNNNNNQ VVTSIKTHAM
201: LVLKNVISVS STNLLSSLTP EFFQQMLNSL RKNNVKYVSQ QATKAVLHVL IDTCPRGRNR LKMIELGAVF ELIELELSNN EKRVSELVFS LLSHLCSLAD
301: GRAELLKHAA GIAIVSKKIL RISPATDESA IQILGLIAKF SATKEVLMEM LRVGGVTKLC MVIQANCEAS LRKKALEILR AHNNVWSNSP CVQIYFVTRY
401: PGQ

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.