Factsheet for GSMUA_Achr8P04940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08620_001	Banana	cytosol	90.28	89.86
GSMUA_Achr3P25750_001	Banana	cytosol	88.43	89.04
GSMUA_Achr4P07400_001	Banana	cytosol	75.93	75.58
Zm00001d019807_P001	Maize	extracellular	15.28	70.21
VIT_18s0001g08790.t01	Wine grape	cytosol	73.15	69.91
VIT_00s0471g00010.t01	Wine grape	cytosol	71.76	69.35
PGSC0003DMT400012566	Potato	cytosol	68.98	66.37
Bra029975.1-P	Field mustard	cytosol	68.06	66.37
AT3G49810.1	Thale cress	cytosol	68.75	66.29
CDX83098	Canola	cytosol	67.82	66.14
CDY53333	Canola	cytosol	68.29	66.0
EER95229	Sorghum	cytosol	68.75	64.71
Solyc04g077610.2.1	Tomato	cytosol	62.73	64.68
AT5G65920.1	Thale cress	cytosol	65.97	64.19
CDY69247	Canola	cytosol	65.74	64.11
Zm00001d028294_P001	Maize	cytosol	68.06	64.05
CDY18670	Canola	cytosol	65.51	63.88
Bra037833.1-P	Field mustard	cytosol	65.51	63.88
HORVU4Hr1G066070.1	Barley	cytosol	67.82	63.7
Zm00001d048008_P001	Maize	cytosol	68.06	63.5
Os03t0232600-01	Rice	cytosol	67.36	63.4
TraesCS4B01G236200.1	Wheat	cytosol	66.9	62.96
TraesCS4D01G237600.1	Wheat	cytosol	66.67	62.75
TraesCS4A01G060800.1	Wheat	cytosol	66.44	62.53
KRH55660	Soybean	cytosol	18.06	62.4
Zm00001d000044_P001	Maize	cytosol	24.77	46.32
GSMUA_Achr8P30400_001	Banana	cytosol	25.23	29.7
GSMUA_Achr10P...	Banana	cytosol	24.54	29.04
GSMUA_Achr7P03220_001	Banana	cytosol	20.6	28.71
GSMUA_Achr11P...	Banana	cytosol	23.84	27.61
GSMUA_Achr5P01000_001	Banana	cytosol	22.45	27.32
GSMUA_Achr8P30420_001	Banana	mitochondrion	17.13	27.11
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	21.53	26.96
GSMUA_Achr6P02470_001	Banana	mitochondrion	23.38	26.58
GSMUA_Achr6P11310_001	Banana	cytosol	22.92	26.05
GSMUA_Achr11P...	Banana	cytosol	21.53	25.41
GSMUA_Achr7P18640_001	Banana	mitochondrion	22.22	25.33
GSMUA_Achr10P...	Banana	cytosol	21.99	25.27
GSMUA_Achr5P01020_001	Banana	cytosol	23.38	25.19
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	22.92	24.69
GSMUA_Achr3P18060_001	Banana	cytosol	21.76	24.67
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	22.22	24.12
GSMUA_Achr11P...	Banana	mitochondrion	23.61	24.0
GSMUA_Achr3P02030_001	Banana	plastid	22.92	23.63
GSMUA_Achr1P13220_001	Banana	cytosol	21.53	23.48
GSMUA_Achr6P18140_001	Banana	cytosol	21.76	22.98
GSMUA_Achr6P25670_001	Banana	cytosol	22.45	22.66
GSMUA_Achr10P...	Banana	plastid	19.91	22.4
GSMUA_Achr1P16250_001	Banana	cytosol	20.6	21.87
GSMUA_Achr5P13860_001	Banana	cytosol	14.58	20.79
GSMUA_Achr9P29630_001	Banana	cytosol	22.92	16.02

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G04940_001	EnsemblPlants:GSMUA_Achr8P04940_001
EnsemblPlants:GSMUA_Achr8T04940_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TMP7	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002956F51	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr8G04940_001]

Coordinates

chr8:+:3264288..3266015

Molecular Weight (calculated)

46783.2 Da

IEP (calculated)

5.473

GRAVY (calculated)

0.168

Length

432 amino acids

Sequence
(BLAST)

001: MPQYQQQASW RLEGGGQIID LETAIKDGIL GGGGGGLPAG KDGTLGATAE KLDLKKMIDE LDSAAPEDVP SVFICPISLE PMVDPVTLCT GQTYERANIL
101: KWFSLGHLTC PTTMQELWDD AVTPNRTLHQ LINAWFSQRY LLLKKRSEDV QGRAAELIVV AHPSVKKTVA DSGGVSLLSS LLGPFTSHAV GSEVIAILVN
201: LCLDSDAKTS LMQPARISLV VDMLNEGTID TKINCTRFIE MLMEEKSFRW EVVSSLSLLV ALLRLVKDKR HPNGMAAGLS LLKAICSHEQ VRSLIVSVGA
301: VPQLVELLPN LSPECSEPAW HILDDLSTTP EGLSALKDCP QTIPNAVRLL MRVSEACTQY ALSILWAVCK LAPDECASLA VEAGLAAKLL LVIQSGCSPE
401: LKQRAAELLK LCSLNYTTTL FISKCKLTRT IQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.