Factsheet for VIT_18s0001g08790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0471g00010.t01	Wine grape	cytosol	78.98	79.87
Solyc04g077610.2.1	Tomato	cytosol	71.68	77.33
PGSC0003DMT400012566	Potato	cytosol	76.77	77.28
GSMUA_Achr2P08620_001	Banana	cytosol	70.8	73.73
GSMUA_Achr8P04940_001	Banana	cytosol	69.91	73.15
GSMUA_Achr3P25750_001	Banana	cytosol	67.26	70.86
KRH52124	Soybean	cytosol	66.59	70.82
KRH61438	Soybean	cytosol	64.38	68.96
KRH05554	Soybean	cytosol	62.61	67.54
KRG88755	Soybean	cytosol	62.83	66.05
GSMUA_Achr4P07400_001	Banana	cytosol	61.5	64.06
Zm00001d019807_P001	Maize	extracellular	13.05	62.77
EER95229	Sorghum	cytosol	61.95	61.0
Zm00001d028294_P001	Maize	cytosol	61.28	60.35
Zm00001d048008_P001	Maize	cytosol	61.06	59.61
HORVU4Hr1G066070.1	Barley	cytosol	60.18	59.13
Os03t0232600-01	Rice	cytosol	59.96	59.04
TraesCS4D01G237600.1	Wheat	cytosol	59.51	58.61
TraesCS4B01G236200.1	Wheat	cytosol	59.29	58.39
TraesCS4A01G060800.1	Wheat	cytosol	59.07	58.17
Zm00001d000044_P001	Maize	cytosol	22.79	44.59
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	24.34	26.76
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	24.34	26.76
VIT_06s0009g00320.t01	Wine grape	cytosol	24.34	26.57
VIT_04s0044g00870.t01	Wine grape	cytosol	23.45	25.73
VIT_03s0063g00180.t01	Wine grape	cytosol	23.45	25.54
VIT_04s0044g01460.t01	Wine grape	cytosol	21.9	24.81
VIT_18s0166g00190.t01	Wine grape	plasma membrane	21.9	24.75
VIT_01s0011g06140.t01	Wine grape	mitochondrion	23.67	24.21
VIT_08s0105g00200.t01	Wine grape	cytosol	21.46	23.89
VIT_06s0009g00370.t01	Wine grape	cytosol	21.02	23.46

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100255725	wikigene:100255725	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CCB45733	ProteinID:CCB45733.1	UniProt:F6H182	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EntrezGene:LOC100255725	wikigene:LOC100255725	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF6	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC54064	UniParc:UPI00015C8162
InterPro:Ubox_domain	ArrayExpress:VIT_18s0001g08790	EnsemblPlantsGene:VIT_18s0001g08790	EnsemblPlants:VIT_18s0001g08790.t01	unigene:Vvi.4061	RefSeq:XP_002285420
RefSeq:XP_002285420.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H182]

Coordinates

chr18:-:7290566..7292458

Molecular Weight (calculated)

49070.7 Da

IEP (calculated)

7.285

GRAVY (calculated)

0.212

Length

452 amino acids

Sequence
(BLAST)

001: MPMYQPSGRR RDGGVMYDVG GDGGHVLDLE TAVKDGILGG GGGVVCGSGV TEKLDLKKMI EDLDSIDVPS VFICPISLEP MQDPVTICTG QTYERSNIVK
101: WFSMGHFTCP TTMQELWDDS ITPNKTLYQL IYSWFSQKYL VMKKRSEDVQ GRALEVLETL KKVKGQARIQ ALKELRQVVS IHASAKKTVA DNGGIGLISS
201: LLGPFTSHAV GSEVIGILVN LSLDSESKSN LMQPAKISLM VDMLNEGSIE TKINCTKLIE ILMEGRDFES EIVPSLSLLV GLLRLVKDKR HQNGILAGLA
301: LLKTICLHEP VRNSVVSIGA VPQLVELLPN LNPACLELAL YILEVLSTLP QGRLALKDCP NMIPNVVKLL MRVSESCTQL ALAILSAVCK LAPEECASLA
401: VEAGLAAKLL LVIQSGCNPV LKQRAAELLK LCSLNYTATI FISKCKLTRT IQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.