Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22633 | Soybean | cytosol, nucleus | 66.91 | 68.73 |
| KRH26691 | Soybean | cytosol | 63.28 | 67.7 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 66.43 | 66.91 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 66.18 | 66.67 |
| Solyc01g009330.1.1 | Tomato | cytosol | 65.46 | 63.62 |
| KRH25324 | Soybean | cytosol | 55.31 | 63.09 |
| PGSC0003DMT400050493 | Potato | cytosol | 59.66 | 61.14 |
| Solyc11g068920.1.1 | Tomato | cytosol | 59.18 | 60.64 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 44.44 | 59.35 |
| PGSC0003DMT400038197 | Potato | cytosol | 64.73 | 59.03 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.52 | 58.7 |
| GSMUA_Achr10P... | Banana | cytosol | 48.55 | 55.07 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 48.79 | 55.04 |
| GSMUA_Achr11P... | Banana | cytosol | 49.52 | 54.96 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 44.93 | 52.39 |
| Os04t0686000-01 | Rice | cytosol | 47.83 | 47.94 |
| VIT_06s0009g00370.t01 | Wine grape | cytosol | 45.89 | 46.91 |
| Os02t0539200-01 | Rice | cytosol | 49.03 | 45.93 |
| EES06927 | Sorghum | cytosol | 46.62 | 45.52 |
| OQU85086 | Sorghum | cytosol | 46.86 | 45.43 |
| Os01t0865700-00 | Rice | plastid | 44.2 | 44.96 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 45.41 | 44.76 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 45.41 | 44.76 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 45.41 | 44.76 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 45.17 | 44.52 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 45.41 | 44.44 |
| EES13136 | Sorghum | cytosol | 45.65 | 44.37 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 45.17 | 44.31 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 44.69 | 44.26 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 43.96 | 44.07 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 44.2 | 43.88 |
| EES03937 | Sorghum | plastid | 43.24 | 43.87 |
| VIT_08s0105g00200.t01 | Wine grape | cytosol | 43.0 | 43.84 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 41.3 | 43.62 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 45.41 | 43.62 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 45.41 | 43.62 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 44.44 | 43.6 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.96 | 43.54 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 45.17 | 43.39 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 44.93 | 43.16 |
| Zm00001d042738_P001 | Maize | cytosol | 42.51 | 43.14 |
| Zm00001d016730_P001 | Maize | cytosol | 44.69 | 42.43 |
| Zm00001d003745_P001 | Maize | nucleus | 45.17 | 41.74 |
| HORVU6Hr1G089590.1 | Barley | plastid | 45.41 | 41.59 |
| HORVU6Hr1G089560.1 | Barley | plastid | 45.17 | 41.46 |
| KXG26241 | Sorghum | cytosol | 44.44 | 39.83 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.51 | 34.43 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 35.27 | 34.19 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.78 | 33.72 |
| VIT_01s0011g06140.t01 | Wine grape | mitochondrion | 34.78 | 32.58 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 33.09 | 32.39 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 33.33 | 31.87 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 33.33 | 31.87 |
| VIT_03s0063g00180.t01 | Wine grape | cytosol | 31.88 | 31.81 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 47.34 | 31.72 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 33.09 | 31.71 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 25.6 | 31.55 |
| KXG23010 | Sorghum | cytosol | 33.09 | 30.18 |
| Os12t0161100-00 | Rice | cytosol | 30.43 | 28.7 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 28.5 | 28.64 |
| VIT_04s0044g01460.t01 | Wine grape | cytosol | 25.6 | 26.57 |
| VIT_18s0001g08790.t01 | Wine grape | cytosol | 26.57 | 24.34 |
| VIT_18s0166g00190.t01 | Wine grape | plasma membrane | 22.95 | 23.75 |
| VIT_00s0471g00010.t01 | Wine grape | cytosol | 25.36 | 23.49 |
| Zm00001d023480_P001 | Maize | cytosol | 31.64 | 23.43 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100254792 | wikigene:100254792 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ProteinID:CCB49207 | ProteinID:CCB49207.1 | UniProt:F6HAE5 | EMBL:FN595504 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | EntrezGene:LOC100254792 | wikigene:LOC100254792 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 |
| PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00015C9842 | InterPro:Ubox_domain |
| ArrayExpress:VIT_06s0009g00320 | EnsemblPlantsGene:VIT_06s0009g00320 | EnsemblPlants:VIT_06s0009g00320.t01 | RefSeq:XP_002275500 | RefSeq:XP_002275500.2 | InterPro:Znf_RING/FYVE/PHD |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HAE5]
Coordinates
chr6:+:10566848..10568125
Molecular Weight (calculated)
46065.4 Da
IEP (calculated)
8.537
GRAVY (calculated)
0.063
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEIDVPSHF MCPISLQLMR DPVTVATGIT YDRENIERWL FSCKNNTCPF TKQVLVDTDL TPNHTLRRLI QAWCIVNACH GVERIPTPKP PIDKAQIIKL
101: LNDAIKFPQM QLKCLQRLRS IAFESDRNKK CLEAAGAVEF LASIIKKDES AVIEVVLEDG SREFTRASDE ALSILYQLET SEAALKSLVS SNYGFIESLV
201: HVLKCGNYQS RAYAAMLLKS IFQVADPIQL INASPELFTE IVHVLRDGIS QQASKAALKL LVELCPWGRN RIKAVVAGVS HVLIEHLLDT SEKRTCELIL
301: VVLDQLCSCA EGRAELLKHG AGLAIVSKKI LRVSQVGTDR AVKILASVSK FSATSRVLQE MLQVGVVSKL CLVLQVDSSK KTKEKTREIL NLHSRVWKNP
401: SCIPARLFSS YPSS
101: LNDAIKFPQM QLKCLQRLRS IAFESDRNKK CLEAAGAVEF LASIIKKDES AVIEVVLEDG SREFTRASDE ALSILYQLET SEAALKSLVS SNYGFIESLV
201: HVLKCGNYQS RAYAAMLLKS IFQVADPIQL INASPELFTE IVHVLRDGIS QQASKAALKL LVELCPWGRN RIKAVVAGVS HVLIEHLLDT SEKRTCELIL
301: VVLDQLCSCA EGRAELLKHG AGLAIVSKKI LRVSQVGTDR AVKILASVSK FSATSRVLQE MLQVGVVSKL CLVLQVDSSK KTKEKTREIL NLHSRVWKNP
401: SCIPARLFSS YPSS
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.