Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050493 | Potato | cytosol | 95.79 | 95.79 |
| Solyc01g009330.1.1 | Tomato | cytosol | 69.55 | 65.96 |
| KRH22633 | Soybean | cytosol, nucleus | 60.15 | 60.3 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 60.64 | 59.18 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.68 | 58.7 |
| KRH26691 | Soybean | cytosol | 55.45 | 57.88 |
| KRH25324 | Soybean | cytosol | 50.74 | 56.47 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.08 | 54.84 |
| GSMUA_Achr10P... | Banana | cytosol | 47.77 | 52.88 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 46.29 | 52.68 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 52.48 | 51.83 |
| Solyc01g007030.2.1 | Tomato | cytosol | 26.98 | 51.66 |
| Solyc01g007010.2.1 | Tomato | cytosol | 51.73 | 51.23 |
| Solyc01g007020.2.1 | Tomato | cytosol | 51.49 | 50.98 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 22.52 | 50.84 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 46.04 | 50.68 |
| GSMUA_Achr11P... | Banana | cytosol | 45.79 | 49.6 |
| Os01t0865700-00 | Rice | plastid | 44.55 | 44.23 |
| Os04t0686000-01 | Rice | cytosol | 44.8 | 43.83 |
| OQU85086 | Sorghum | cytosol | 46.04 | 43.56 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 45.3 | 43.26 |
| EES06927 | Sorghum | cytosol | 45.3 | 43.16 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 44.8 | 43.1 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 44.8 | 43.1 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 44.8 | 43.1 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 44.06 | 42.69 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 44.55 | 42.65 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 44.06 | 42.58 |
| Os02t0539200-01 | Rice | cytosol | 46.53 | 42.53 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 44.31 | 42.42 |
| Zm00001d042738_P001 | Maize | cytosol | 42.82 | 42.4 |
| EES03937 | Sorghum | plastid | 42.82 | 42.4 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 43.32 | 42.37 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.81 | 42.34 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 43.81 | 42.14 |
| Solyc01g009320.1.1 | Tomato | cytosol | 43.56 | 42.11 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 43.56 | 40.84 |
| Zm00001d016730_P001 | Maize | cytosol | 44.06 | 40.83 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 43.32 | 40.6 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 43.32 | 40.6 |
| Solyc06g074140.1.1 | Tomato | cytosol | 42.08 | 40.48 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 43.07 | 40.37 |
| EES13136 | Sorghum | cytosol | 42.08 | 39.91 |
| HORVU6Hr1G089560.1 | Barley | plastid | 44.31 | 39.69 |
| HORVU6Hr1G089590.1 | Barley | plastid | 44.31 | 39.6 |
| Zm00001d003745_P001 | Maize | nucleus | 43.56 | 39.29 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.87 | 39.03 |
| KXG26241 | Sorghum | cytosol | 43.07 | 37.66 |
| Solyc11g068940.1.1 | Tomato | cytosol | 38.12 | 36.41 |
| Solyc01g007050.1.1 | Tomato | cytosol | 35.4 | 33.97 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 35.64 | 33.72 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.4 | 33.49 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.41 | 32.55 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 32.67 | 31.21 |
| Solyc01g080920.2.1 | Tomato | cytosol | 31.44 | 31.05 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 33.17 | 31.02 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 32.67 | 30.48 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 25.25 | 30.36 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 32.43 | 30.25 |
| Solyc01g107980.2.1 | Tomato | cytosol | 30.2 | 29.4 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 44.8 | 29.29 |
| Solyc04g008100.1.1 | Tomato | cytosol | 31.44 | 28.73 |
| Solyc01g005160.2.1 | Tomato | mitochondrion | 31.93 | 28.67 |
| Solyc11g006030.1.1 | Tomato | cytosol | 30.45 | 28.6 |
| KXG23010 | Sorghum | cytosol | 31.93 | 28.41 |
| Os12t0161100-00 | Rice | cytosol | 29.46 | 27.11 |
| Solyc04g077610.2.1 | Tomato | cytosol | 25.99 | 25.06 |
| Solyc11g005700.1.1 | Tomato | cytosol | 24.5 | 23.57 |
| Solyc04g071030.1.1 | Tomato | cytosol | 23.27 | 22.01 |
| Solyc05g056500.1.1 | Tomato | cytosol | 21.78 | 21.95 |
| Zm00001d023480_P001 | Maize | cytosol | 28.96 | 20.93 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | UniProt:K4DA49 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g068920.1 | EnsemblPlants:Solyc11g068920.1.1 | UniParc:UPI000276A799 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4DA49]
Coordinates
chr11:+:53482855..53484069
Molecular Weight (calculated)
45615.0 Da
IEP (calculated)
8.645
GRAVY (calculated)
-0.076
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIDIPSYF LCPISMEVMR DPVTILTGIT YDRQNIEKWL FSCKHTTCPV TNQDLKFKDL TPNHNLRRLI QSWCMLNSSN GIQRMPTPKP QVQRAHVVRI
101: LNEAQKNPDM ELDCLRRIKS IARVSESNKM CLESAGVVDF LTSIVMKKKE EPEASDEALN ILFHLNPSDT ELKKLINSHN DNQFLDSLLQ FLNNGHVQSR
201: TNAIALLRST LSMADPAQLI GIQPVYIKGI VCILNDKVSQ QATKLALKLL VELCPWGRNR IKAIENGAVF ALIELLLDTN ERRVCELILT ALDHLCTCAD
301: GRSELLRHGG GIAIVSKKIL RVSHLASDRG VRILYSISKF LATCYSTKVL QEMLQVGIVS KLCLVLQVDV SPKTKEKAKE ILRLHSRVWR DSSCIPPHLL
401: SSYP
101: LNEAQKNPDM ELDCLRRIKS IARVSESNKM CLESAGVVDF LTSIVMKKKE EPEASDEALN ILFHLNPSDT ELKKLINSHN DNQFLDSLLQ FLNNGHVQSR
201: TNAIALLRST LSMADPAQLI GIQPVYIKGI VCILNDKVSQ QATKLALKLL VELCPWGRNR IKAIENGAVF ALIELLLDTN ERRVCELILT ALDHLCTCAD
301: GRSELLRHGG GIAIVSKKIL RVSHLASDRG VRILYSISKF LATCYSTKVL QEMLQVGIVS KLCLVLQVDV SPKTKEKAKE ILRLHSRVWR DSSCIPPHLL
401: SSYP
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.