Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G070390.1 | golgi |
| HORVU3Hr1G088110.3 | golgi |
| HORVU6Hr1G077710.3 | |
| HORVU7Hr1G036470.3 | |
| HORVU7Hr1G036500.7 | |
| HORVU7Hr1G036540.3 | |
| HORVU7Hr1G036570.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 56.52 | 14.53 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 100.0 | 10.77 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 100.0 | 10.77 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 97.83 | 10.54 |
| PGSC0003DMT400054948 | Potato | cytosol | 56.52 | 9.12 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 60.87 | 9.03 |
| Os04t0686000-01 | Rice | cytosol | 78.26 | 8.72 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 73.91 | 8.67 |
| EES13136 | Sorghum | cytosol | 76.09 | 8.22 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 63.04 | 8.17 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 69.57 | 7.75 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 63.04 | 6.73 |
| KRH26691 | Soybean | cytosol | 56.52 | 6.72 |
| Solyc11g068920.1.1 | Tomato | cytosol | 58.7 | 6.68 |
| PGSC0003DMT400050493 | Potato | cytosol | 58.7 | 6.68 |
| HORVU7Hr1G093780.1 | Barley | cytosol, endoplasmic reticulum, extracellular | 56.52 | 6.65 |
| Solyc01g009330.1.1 | Tomato | cytosol | 60.87 | 6.57 |
| CDY23218 | Canola | cytosol | 56.52 | 6.57 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 58.7 | 6.52 |
| KRH22633 | Soybean | cytosol, nucleus | 56.52 | 6.45 |
| KRH32856 | Soybean | cytosol | 58.7 | 6.43 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 56.52 | 6.4 |
| PGSC0003DMT400054949 | Potato | cytosol | 56.52 | 6.4 |
| CDX95337 | Canola | cytosol | 56.52 | 6.36 |
| HORVU6Hr1G089560.1 | Barley | plastid | 60.87 | 6.21 |
| HORVU6Hr1G089590.1 | Barley | plastid | 60.87 | 6.19 |
| CDX78096 | Canola | cytosol | 52.17 | 6.17 |
| PGSC0003DMT400038197 | Potato | cytosol | 60.87 | 6.17 |
| CDX75084 | Canola | cytosol | 54.35 | 6.16 |
| CDX84168 | Canola | cytosol | 54.35 | 6.16 |
| HORVU4Hr1G064070.1 | Barley | mitochondrion | 58.7 | 6.14 |
| Bra033430.1-P | Field mustard | cytosol | 56.52 | 6.13 |
| Solyc01g007010.2.1 | Tomato | cytosol | 54.35 | 6.13 |
| Solyc01g007020.2.1 | Tomato | cytosol | 54.35 | 6.13 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 54.35 | 6.11 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 54.35 | 6.08 |
| AT2G35930.1 | Thale cress | cytosol | 54.35 | 6.08 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 54.35 | 6.08 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 56.52 | 6.0 |
| KRH72176 | Soybean | cytosol | 54.35 | 5.98 |
| AT3G52450.1 | Thale cress | cytosol | 56.52 | 5.98 |
| KRG96268 | Soybean | cytosol | 54.35 | 5.97 |
| KRG96257 | Soybean | cytosol | 54.35 | 5.97 |
| KRH68014 | Soybean | cytosol | 54.35 | 5.95 |
| CDX79645 | Canola | cytosol | 52.17 | 5.88 |
| CDY59599 | Canola | cytosol | 52.17 | 5.87 |
| CDX84587 | Canola | cytosol | 52.17 | 5.87 |
| Bra023044.1-P | Field mustard | cytosol | 52.17 | 5.87 |
| CDY40422 | Canola | cytosol | 52.17 | 5.83 |
| CDY32070 | Canola | cytosol | 52.17 | 5.83 |
| Bra017278.1-P | Field mustard | cytosol | 52.17 | 5.83 |
| KRH35744 | Soybean | cytosol | 52.17 | 5.73 |
| Bra012803.1-P | Field mustard | cytosol | 52.17 | 5.67 |
| Bra006925.1-P | Field mustard | cytosol | 52.17 | 5.52 |
| HORVU6Hr1G066870.1 | Barley | cytosol | 50.0 | 5.36 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 52.17 | 5.3 |
| HORVU4Hr1G066070.1 | Barley | cytosol | 52.17 | 5.22 |
| HORVU7Hr1G040790.2 | Barley | plastid | 54.35 | 5.12 |
| HORVU6Hr1G077120.1 | Barley | plastid | 56.52 | 5.08 |
| HORVU2Hr1G074130.1 | Barley | plastid | 56.52 | 5.02 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 67.39 | 5.02 |
| Bra005309.1-P | Field mustard | cytosol | 36.96 | 4.39 |
| PGSC0003DMT400055051 | Potato | cytosol | 34.78 | 4.06 |
| PGSC0003DMT400055050 | Potato | cytosol | 32.61 | 3.83 |
| KRH25324 | Soybean | cytosol | 23.91 | 3.03 |
| Solyc01g007030.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| HORVU2Hr1G076490.1 | Barley | mitochondrion | 0.0 | 0.0 |
| PGSC0003DMT400055045 | Potato | cytosol | 0.0 | 0.0 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400054947 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:A0A287JRJ7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G123130 | EnsemblPlants:HORVU2Hr1G123130.1 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 |
| PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF57850 | UniParc:UPI000B47E172 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:754722899..754723432
Molecular Weight (calculated)
5303.5 Da
IEP (calculated)
5.519
GRAVY (calculated)
0.143
Length
46 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEVEVPSYF VCPITLDVMR DPVTLPTGIT YDRHAIHRWL RLAASC
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.