Factsheet for Bra005309.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75084	Canola	cytosol	100.0	95.32
Bra017278.1-P	Field mustard	cytosol	89.92	84.47
Bra023044.1-P	Field mustard	cytosol	88.37	83.62
AT2G35930.1	Thale cress	cytosol	88.63	83.45
Bra006925.1-P	Field mustard	cytosol	81.14	72.18
Bra012803.1-P	Field mustard	cytosol	78.55	71.87
Bra033430.1-P	Field mustard	cytosol	78.29	71.46
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	59.17	55.72
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	58.91	55.47
PGSC0003DMT400055045	Potato	cytosol	29.97	54.98
Solyc01g007030.2.1	Tomato	cytosol	29.97	54.98
PGSC0003DMT400055050	Potato	cytosol	55.56	54.85
PGSC0003DMT400055051	Potato	cytosol	55.81	54.82
KRH68014	Soybean	cytosol	58.4	53.81
PGSC0003DMT400054949	Potato	cytosol	56.07	53.45
KRH72176	Soybean	cytosol	57.36	53.11
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	55.56	52.96
GSMUA_Achr7P03220_001	Banana	cytosol	42.38	52.9
KRH35744	Soybean	cytosol	57.11	52.74
KRH32856	Soybean	cytosol	57.11	52.62
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	55.56	52.57
KRG96257	Soybean	cytosol	56.85	52.51
KRG96268	Soybean	cytosol	56.59	52.27
Solyc01g007020.2.1	Tomato	cytosol	55.04	52.21
Solyc01g007010.2.1	Tomato	cytosol	54.52	51.72
PGSC0003DMT400054947	Potato	cytosol	39.28	50.33
PGSC0003DMT400054948	Potato	cytosol	36.95	50.18
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	23.0	49.72
GSMUA_Achr5P01000_001	Banana	cytosol	43.93	47.89
GSMUA_Achr11P...	Banana	cytosol	45.22	46.92
GSMUA_Achr10P...	Banana	cytosol	44.19	46.85
GSMUA_Achr8P30400_001	Banana	cytosol	43.93	46.32
EES06927	Sorghum	cytosol	47.03	42.92
OQU85086	Sorghum	cytosol	47.29	42.86
TraesCS6D01G367100.1	Wheat	cytosol	45.74	42.14
TraesCS6B01G421900.1	Wheat	cytosol	45.48	41.9
Os04t0686000-01	Rice	cytosol	44.7	41.89
TraesCS6D01G367600.1	Wheat	cytosol	45.48	41.61
Os01t0865700-00	Rice	plastid	43.67	41.52
TraesCS6A01G382300.1	Wheat	cytosol	44.96	41.23
TraesCS6B01G421400.1	Wheat	cytosol	44.7	41.19
TraesCS6B01G420600.1	Wheat	cytosol	44.44	40.95
EES03937	Sorghum	plastid	43.15	40.93
TraesCS6A01G382800.1	Wheat	cytosol	44.44	40.76
Os02t0539200-01	Rice	cytosol	46.51	40.72
Zm00001d042738_P001	Maize	cytosol	42.89	40.69
TraesCS3D01G370000.1	Wheat	cytosol	43.93	40.67
HORVU3Hr1G083500.1	Barley	cytosol	43.15	40.44
TraesCS3B01G409400.1	Wheat	cytosol	43.41	40.29
TraesCS3A01G376900.1	Wheat	cytosol	43.41	40.19
HORVU6Hr1G089560.1	Barley	plastid	45.99	39.47
Zm00001d016730_P001	Maize	cytosol	44.44	39.45
HORVU6Hr1G089590.1	Barley	plastid	45.99	39.38
TraesCS2B01G314500.1	Wheat	cytosol	43.67	39.21
TraesCS2A01G298000.1	Wheat	cytosol	43.41	38.98
EES13136	Sorghum	cytosol	42.64	38.73
TraesCS2D01G296100.1	Wheat	cytosol	42.89	38.52
Zm00001d003745_P001	Maize	nucleus	44.19	38.17
HORVU0Hr1G003810.1	Barley	cytosol	42.38	38.05
KXG26241	Sorghum	cytosol	44.7	37.45
HORVU2Hr1G123130.1	Barley	cytosol	4.39	36.96
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	36.18	35.71
Bra038683.1-P	Field mustard	cytosol	37.98	32.89
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.66	32.32
Bra034806.1-P	Field mustard	cytosol	38.5	31.91
TraesCS2B01G601300.1	Wheat	cytosol	35.14	31.85
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.14	31.85
Bra001424.1-P	Field mustard	cytosol	37.47	30.98
HORVU2Hr1G123050.1	Barley	cytosol	26.61	30.65
TraesCS6B01G209000.1	Wheat	cytosol	32.04	29.31
TraesCS6A01G176800.1	Wheat	cytosol	32.56	29.17
TraesCS6D01G167300.1	Wheat	cytosol	32.3	28.87
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	32.04	28.64
Bra038205.1-P	Field mustard	cytosol	30.49	28.3
KXG23010	Sorghum	cytosol	32.82	27.97
Bra022417.1-P	Field mustard	cytosol	30.49	27.96
Bra022415.1-P	Field mustard	cytosol	30.49	27.96
GSMUA_Achr9P29630_001	Banana	cytosol	44.19	27.67
Bra014206.1-P	Field mustard	cytosol	29.97	27.42
Os12t0161100-00	Rice	cytosol	30.75	27.11
Bra025442.1-P	Field mustard	mitochondrion	29.46	26.03
Bra039752.1-P	Field mustard	cytosol	27.91	25.59
Bra001067.1-P	Field mustard	mitochondrion	23.77	25.0
Bra022347.1-P	Field mustard	cytosol	25.84	23.58
Bra040605.1-P	Field mustard	mitochondrion	22.48	23.2
Bra024318.1-P	Field mustard	cytosol	23.77	21.96
Bra037568.1-P	Field mustard	cytosol	23.26	21.79
Bra001717.1-P	Field mustard	cytosol	23.77	21.7
Zm00001d023480_P001	Maize	cytosol	28.94	20.04
Bra029975.1-P	Field mustard	cytosol	21.71	18.96
Bra037833.1-P	Field mustard	cytosol	21.71	18.96

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra005309
EnsemblPlants:Bra005309.1	EnsemblPlants:Bra005309.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4CM72	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF65	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002547D42	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT2G35930 (E=9e-184) PUB23 | PUB23 (PLANT U-BOX 23); ubiquitin-protein ligase

Coordinates

chrA05:-:4719051..4720214

Molecular Weight (calculated)

43035.7 Da

IEP (calculated)

9.079

GRAVY (calculated)

-0.055

Length

387 amino acids

Sequence
(BLAST)

001: MKDPVIVSTG ITYDRDSIEK WLFSAKKNSC PVTKQDITDA DLTPNHTLRR LIQSWCTVNA SHGVERIPTP RPPISKSEIE KLLKDSASSH QNLAKCFKRL
101: RHIVSENASN KRCLEAAGVP EFLATIVSNK DSSMSLTDEA LSLLYHLDTS ETCLKNLLNN KKGNDIVNSL TKIMNRGIYE SRAYATLLLK NILEVADPMQ
201: IMTLKPAIFT EVVQILDDRI SHKATKSALH ILVNVCPWGR NRHKAVEAGV ISMIIELLMD ESFSSDRRGP EMAMVVLDLL CQCAEGRAEF LNHGAAIAVV
301: CKKILRVSQT ASDRAVRVLF SVGRFCATPA LLNEMLQLGV VAKLCLVLQV SCGSKTKEKA KELLKLHARI WRDSPCLTRN MILAYPS

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.