Factsheet for Bra024318.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08864	Canola	cytosol	99.52	99.52
AT5G64660.1	Thale cress	cytosol	89.98	89.76
VIT_04s0044g00870.t01	Wine grape	cytosol	54.89	55.83
KRH43397	Soybean	cytosol	54.65	54.78
KRH59546	Soybean	cytosol	54.18	54.31
Bra001717.1-P	Field mustard	cytosol	54.89	54.25
Bra037568.1-P	Field mustard	cytosol	53.22	54.0
Bra022347.1-P	Field mustard	cytosol	54.18	53.54
KRH53869	Soybean	cytosol	51.31	51.56
PGSC0003DMT400065698	Potato	cytosol	47.73	47.62
KRH36899	Soybean	cytosol	42.0	47.44
Solyc11g005700.1.1	Tomato	cytosol	47.26	47.14
GSMUA_Achr8P30420_001	Banana	mitochondrion	28.64	43.96
GSMUA_Achr10P...	Banana	plastid	33.41	36.46
GSMUA_Achr5P01020_001	Banana	cytosol	34.61	36.16
GSMUA_Achr6P18140_001	Banana	cytosol	34.37	35.21
TraesCS2B01G315100.1	Wheat	cytosol	36.99	35.15
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	36.99	35.15
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	36.99	35.15
Zm00001d016719_P001	Maize	cytosol	35.08	34.27
Zm00001d050689_P001	Maize	cytosol	34.13	33.33
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	35.08	33.11
EES05205	Sorghum	cytosol	35.56	32.89
OQU81548	Sorghum	mitochondrion	35.08	32.89
Os04t0418500-01	Rice	plastid	35.08	32.59
HORVU2Hr1G074130.1	Barley	plastid	37.23	30.12
Os02t0540700-00	Rice	plastid	35.8	29.7
Bra012803.1-P	Field mustard	cytosol	26.97	26.71
Bra017278.1-P	Field mustard	cytosol	25.78	26.21
Bra023044.1-P	Field mustard	cytosol	25.3	25.92
Bra006925.1-P	Field mustard	cytosol	26.25	25.29
Bra033430.1-P	Field mustard	cytosol	25.54	25.24
Os05t0439400-01	Rice	plasma membrane	27.21	25.22
KXG22102	Sorghum	mitochondrion	27.45	25.16
Zm00001d038280_P001	Maize	cytosol	26.97	25.0
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	26.73	24.72
Bra029975.1-P	Field mustard	cytosol	26.01	24.61
TraesCS1A01G274800.1	Wheat	mitochondrion	26.49	24.5
TraesCS1B01G284200.1	Wheat	mitochondrion	26.49	24.5
Bra022417.1-P	Field mustard	cytosol	24.58	24.41
Bra022415.1-P	Field mustard	cytosol	24.58	24.41
Bra037833.1-P	Field mustard	cytosol	25.78	24.38
TraesCS1D01G274600.1	Wheat	mitochondrion	26.25	24.28
Bra005309.1-P	Field mustard	cytosol	21.96	23.77
Bra038205.1-P	Field mustard	cytosol	23.63	23.74
Bra025442.1-P	Field mustard	mitochondrion	24.58	23.52
Bra014206.1-P	Field mustard	cytosol	23.63	23.4
Bra039752.1-P	Field mustard	cytosol	23.15	22.99
Bra038683.1-P	Field mustard	cytosol	23.15	21.7
Bra001424.1-P	Field mustard	cytosol	23.87	21.37
Bra001067.1-P	Field mustard	mitochondrion	18.38	20.92
Bra040605.1-P	Field mustard	mitochondrion	17.9	20.0
Bra034806.1-P	Field mustard	cytosol	21.96	19.7

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra024318
EnsemblPlants:Bra024318.1	EnsemblPlants:Bra024318.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M4E6B4	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000253F41A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G64660 (E=3e-196) ATCMPG2, CMPG2 | U-box domain-containing protein

Coordinates

chrA06:-:14911820..14913079

Molecular Weight (calculated)

46961.2 Da

IEP (calculated)

9.093

GRAVY (calculated)

-0.072

Length

419 amino acids

Sequence
(BLAST)

001: MRKDDLYITV PSFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRASVEPSE LAAPTRDEIA
101: DAIDRVKVEK EERFDREVLA KILRFARESD DNRGFLAGKD DFVRLLVDLM SQVDFKTTSA AKLLIVQEAV KILSMIRSKI SDRRRFSNLV LNNGRDRLST
201: IVYFFKTGNV ELKIDCAGLL EFIAVDSESK VLIAERDGLV VELMKSISRD SDSSLIEATL SCLIAISSPR RVKLNLIREK LIKDLTKLLT DPTTSSVSVT
301: EKSLKLLESL ASTKEGRSEI CGGDGECLKT VVKKLMKVST AATEHAVTVL WSVSYLFKEE KALEAVTSTN GVTKILLLLQ SNCSPAVRRM LTDLLKVFKV
401: NSRSCLSAYD TKTTHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.