Factsheet for Bra038205.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50158	Canola	cytosol	98.8	98.8
Bra022415.1-P	Field mustard	cytosol	90.89	89.81
Bra022417.1-P	Field mustard	cytosol	90.89	89.81
AT3G19380.1	Thale cress	cytosol, golgi, plastid	87.29	86.46
Bra014206.1-P	Field mustard	cytosol	81.53	80.38
KRH50316	Soybean	cytosol, plasma membrane, plastid	69.3	69.81
KRH70657	Soybean	cytosol	68.59	68.92
Solyc01g107980.2.1	Tomato	cytosol	68.59	68.92
PGSC0003DMT400066588	Potato	cytosol	68.11	68.43
VIT_03s0063g00180.t01	Wine grape	cytosol	66.91	67.23
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	45.32	54.78
EES06938	Sorghum	extracellular	50.36	51.6
Zm00001d050712_P001	Maize	extracellular, plastid	50.6	51.59
GSMUA_Achr1P13220_001	Banana	cytosol	48.68	51.26
TraesCS6A01G256700.1	Wheat	extracellular	49.64	50.86
TraesCS6D01G237900.1	Wheat	extracellular	49.64	50.86
TraesCS6B01G268300.1	Wheat	extracellular	49.64	50.86
Os02t0548700-00	Rice	cytosol, extracellular, plastid	50.6	50.6
Zm00001d016764_P001	Maize	extracellular	49.4	49.28
GSMUA_Achr6P25670_001	Banana	cytosol	49.64	48.36
Bra023044.1-P	Field mustard	cytosol	30.46	31.05
Bra017278.1-P	Field mustard	cytosol	30.46	30.83
Bra005309.1-P	Field mustard	cytosol	28.3	30.49
Bra012803.1-P	Field mustard	cytosol	30.22	29.79
Bra033430.1-P	Field mustard	cytosol	30.22	29.72
Bra006925.1-P	Field mustard	cytosol	30.7	29.43
Bra025442.1-P	Field mustard	mitochondrion	29.5	28.08
Bra029975.1-P	Field mustard	cytosol	27.82	26.19
Bra039752.1-P	Field mustard	cytosol	25.42	25.12
Bra037833.1-P	Field mustard	cytosol	26.62	25.06
Bra022347.1-P	Field mustard	cytosol	24.94	24.53
Bra038683.1-P	Field mustard	cytosol	26.14	24.38
Bra001717.1-P	Field mustard	cytosol	24.7	24.29
Bra034806.1-P	Field mustard	cytosol	26.86	23.98
Bra037568.1-P	Field mustard	cytosol	23.5	23.73
Bra024318.1-P	Field mustard	cytosol	23.74	23.63
Bra001424.1-P	Field mustard	cytosol	26.14	23.29
Bra040605.1-P	Field mustard	mitochondrion	19.9	22.13
Bra001067.1-P	Field mustard	mitochondrion	19.42	22.01

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra038205
EnsemblPlants:Bra038205.1	EnsemblPlants:Bra038205.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4FAU0	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002544CA9	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G19380 (E=7e-166) PUB25 | PUB25 (PLANT U-BOX 25); binding / ubiquitin-protein ligase

Coordinates

chrA01:+:21663779..21665032

Molecular Weight (calculated)

45692.0 Da

IEP (calculated)

7.087

GRAVY (calculated)

0.008

Length

417 amino acids

Sequence
(BLAST)

001: MPRSLEPLDL GIQIPYHFRC PISLELMRDP VTVCTGQTYD RTSIESWVST GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASATSGAHV SARSRAAALR RLRGFARDSE KNRVLIAAHN AKEILIRILF SDDIDSSELV SESLALLVMF PMTEHDKCVS IISDPGRVEF
201: LTRLLFDSSV ETRVNAAALI EMAVTGSKET VSSSESIFEG VLDLLRNPAS SYPRRALKIG IKALFALCLS KNTRHVAVSA GAPEILIDRL AAGLDRCDTE
301: RALATVEILC RSPEGCAAFG EHALTVPVLV KTILRVSDRA TEYAAGALLA LCTAEERWRD EAAAAGVVVQ LLLMVQSECT ERAKRKAQKL LKLLRDSWPD
401: YSFANSDDFA CSEVVPF

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.