Factsheet for Bra034806.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08490	Canola	cytosol	93.36	98.64
Bra038683.1-P	Field mustard	cytosol	76.87	80.31
AT3G11840.1	Thale cress	cytosol	77.09	78.95
Bra001424.1-P	Field mustard	cytosol	77.3	77.14
VIT_08s0105g00200.t01	Wine grape	cytosol	45.18	51.97
KRH72180	Soybean	cytosol	23.55	47.41
KRH68013	Soybean	cytosol	29.34	46.28
GSMUA_Achr11P...	Banana	cytosol	35.12	44.81
PGSC0003DMT400054946	Potato	cytosol	37.9	42.04
Solyc01g007050.1.1	Tomato	cytosol	37.69	41.81
Bra023044.1-P	Field mustard	cytosol	35.33	40.34
Bra017278.1-P	Field mustard	cytosol	35.55	40.29
Bra005309.1-P	Field mustard	cytosol	31.91	38.5
Bra012803.1-P	Field mustard	cytosol	32.55	35.93
Bra033430.1-P	Field mustard	cytosol	32.33	35.61
Bra006925.1-P	Field mustard	cytosol	32.76	35.17
Bra038205.1-P	Field mustard	cytosol	23.98	26.86
Bra022417.1-P	Field mustard	cytosol	23.77	26.3
Bra022415.1-P	Field mustard	cytosol	23.77	26.3
Bra014206.1-P	Field mustard	cytosol	23.34	25.77
Bra039752.1-P	Field mustard	cytosol	21.84	24.17
Bra025442.1-P	Field mustard	mitochondrion	22.06	23.52
Bra029975.1-P	Field mustard	cytosol	21.41	22.57
Bra001067.1-P	Field mustard	mitochondrion	17.77	22.55
Bra024318.1-P	Field mustard	cytosol	19.7	21.96
Bra022347.1-P	Field mustard	cytosol	19.7	21.7
Bra001717.1-P	Field mustard	cytosol	19.7	21.7
Bra040605.1-P	Field mustard	mitochondrion	17.13	21.33
Bra037568.1-P	Field mustard	cytosol	18.42	20.82
Bra037833.1-P	Field mustard	cytosol	19.49	20.54

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra034806	EnsemblPlants:Bra034806.1	EnsemblPlants:Bra034806.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR013083	UniProt:M4F160	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF24
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002547557	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G11840 (E=2e-185) PUB24 | PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase

Coordinates

chrA05:+:21508166..21509951

Molecular Weight (calculated)

52355.0 Da

IEP (calculated)

8.063

GRAVY (calculated)

-0.107

Length

467 amino acids

Sequence
(BLAST)

001: MDHEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQSI VQWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ATRGVVRIPT PRAPPGKPNI
101: IEEIKNLKKF GQEALGKEDT LKKLEVLAME GERNRRLMCE GGVHKSLILF IVKYAREEEE EEGQHHIKGK LDESLRLLHL IGVPLNEART ILIENERILE
201: SLTMVLNQKD FMNKAYTIVL LRNLTENTSS HIVERLSAEI FKGIIGFLKD VVSRSNRVNP SVCATVQPSN SRVRNKAPSK LDHSVVIKQA VIAALMILLE
301: TSSWSRNRTI LVDLGAVSKL IELEISSTGE KRTTELVLGI LSRLCCCANG RAEFLAHRGG IAIVTKRLLR VSAAADDRAI SILSSVSKYS PESEVVEEMA
401: SVSTVKKLCA VLSIDCSLSL KEKAKEILRN HIDEWKKFPC IDVALISKLL SSSPKDLLTE YYSRVGV

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.