Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01063 | Canola | cytosol | 92.99 | 93.41 |
| Bra034806.1-P | Field mustard | cytosol | 98.64 | 93.36 |
| CDY47911 | Canola | cytosol | 75.34 | 78.91 |
| CDY53920 | Canola | cytosol | 76.92 | 77.98 |
| AT3G11840.1 | Thale cress | cytosol | 79.86 | 77.41 |
| CDY67531 | Canola | cytosol | 77.15 | 76.29 |
| CDX73849 | Canola | cytosol | 78.96 | 74.73 |
| VIT_08s0105g00200.t01 | Wine grape | cytosol | 47.51 | 51.72 |
| KRH72180 | Soybean | cytosol | 24.66 | 46.98 |
| KRH68013 | Soybean | cytosol | 30.32 | 45.27 |
| GSMUA_Achr11P... | Banana | cytosol | 36.43 | 43.99 |
| Solyc01g007050.1.1 | Tomato | cytosol | 39.14 | 41.09 |
| PGSC0003DMT400054946 | Potato | cytosol | 39.14 | 41.09 |
| CDX75084 | Canola | cytosol | 36.88 | 40.15 |
| CDX84587 | Canola | cytosol | 37.1 | 40.1 |
| CDY40422 | Canola | cytosol | 37.33 | 40.05 |
| CDX79645 | Canola | cytosol | 36.88 | 39.95 |
| CDX84168 | Canola | cytosol | 36.65 | 39.9 |
| CDY32070 | Canola | cytosol | 37.1 | 39.81 |
| CDX78096 | Canola | cytosol | 33.48 | 38.05 |
| CDX95337 | Canola | cytosol | 34.84 | 37.65 |
| CDY59599 | Canola | cytosol | 34.39 | 37.16 |
| CDY23218 | Canola | cytosol | 33.03 | 36.87 |
| CDY50158 | Canola | cytosol | 25.34 | 26.86 |
| CDX92328 | Canola | cytosol | 25.34 | 26.48 |
| CDX95458 | Canola | cytosol | 24.89 | 26.38 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 25.11 | 26.37 |
| CDY16513 | Canola | cytosol | 24.43 | 25.53 |
| CDY59286 | Canola | cytosol | 24.43 | 25.53 |
| CDY50319 | Canola | cytosol | 22.85 | 23.65 |
| CDY16432 | Canola | cytosol | 22.85 | 23.6 |
| CDY27655 | Canola | mitochondrion | 23.08 | 23.29 |
| CDX99694 | Canola | mitochondrion | 23.08 | 23.29 |
| CDX92016 | Canola | mitochondrion | 19.0 | 22.83 |
| CDX75980 | Canola | cytosol | 21.72 | 22.64 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 18.78 | 22.55 |
| CDY53333 | Canola | cytosol | 22.62 | 22.37 |
| CDX83098 | Canola | cytosol | 22.4 | 22.35 |
| CDX82332 | Canola | cytosol | 21.04 | 21.93 |
| CDY28714 | Canola | mitochondrion | 18.55 | 21.87 |
| CDX92262 | Canola | cytosol | 20.36 | 21.79 |
| CDY08864 | Canola | cytosol | 20.59 | 21.72 |
| CDX84538 | Canola | cytosol | 20.36 | 21.48 |
| CDY51529 | Canola | mitochondrion | 18.1 | 21.33 |
| CDX99325 | Canola | cytosol | 20.36 | 21.28 |
| CDY69247 | Canola | cytosol | 20.59 | 20.54 |
| CDY18670 | Canola | cytosol | 20.36 | 20.32 |
| CDY71041 | Canola | cytosol | 18.78 | 20.1 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078F215 | UniProt:A0A078F215 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY08490 | ProteinID:CDY08490 | ProteinID:CDY08490.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00000261001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF24 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE11CB | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g27260DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078F215]
Coordinates
chrLK031986:+:399827..401612
Molecular Weight (calculated)
49602.7 Da
IEP (calculated)
7.026
GRAVY (calculated)
-0.089
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQSI VQWLEKVPSC PVTKQSLPLD SDLTPNHMLR RLIQHWCVEN ATRGVVRIPT PRAPPGKPNL
101: TEEIKNLKKF GQEALGKEDT LKKLEVLAME GERNRRLMCE GGVHKSLILF IVKYAREEEE EEGQHRIKGK LDESLRLLHL IGVPLNEART ILIENERILE
201: SLTMVLNQKD FMNKAYTIVL LRNLTENTSS HIVERLSAEI FKGIIGFLKD VAPSKLDHSV VIKQAVTAAL MILLETSSWS RNRTILVDLG AVSKLIELEI
301: SSTGEKRTTE LVLGILSRLC CCANGRAEFL AHRGGIAIVT KRLLRVSAAA DDRAISILSS VSKYSPESEV VEEMASVSTV KKLCAVLSID CSLSLKEKAK
401: EILRDHIDEW KKFPCIDVAL ISKLLSSSPK DLLTEYYSRV GV
101: TEEIKNLKKF GQEALGKEDT LKKLEVLAME GERNRRLMCE GGVHKSLILF IVKYAREEEE EEGQHRIKGK LDESLRLLHL IGVPLNEART ILIENERILE
201: SLTMVLNQKD FMNKAYTIVL LRNLTENTSS HIVERLSAEI FKGIIGFLKD VAPSKLDHSV VIKQAVTAAL MILLETSSWS RNRTILVDLG AVSKLIELEI
301: SSTGEKRTTE LVLGILSRLC CCANGRAEFL AHRGGIAIVT KRLLRVSAAA DDRAISILSS VSKYSPESEV VEEMASVSTV KKLCAVLSID CSLSLKEKAK
401: EILRDHIDEW KKFPCIDVAL ISKLLSSSPK DLLTEYYSRV GV
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.