Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039752.1-P | Field mustard | cytosol | 97.43 | 98.82 |
| CDY50319 | Canola | cytosol | 97.66 | 97.89 |
| AT1G66160.1 | Thale cress | cytosol | 74.77 | 74.25 |
| CDY27655 | Canola | mitochondrion | 59.81 | 58.45 |
| CDX99694 | Canola | mitochondrion | 59.81 | 58.45 |
| KRH30918 | Soybean | mitochondrion | 47.2 | 46.44 |
| KRG97963 | Soybean | mitochondrion | 46.73 | 46.4 |
| PGSC0003DMT400073836 | Potato | cytosol | 44.39 | 45.35 |
| KRH17309 | Soybean | cytosol, mitochondrion | 46.26 | 45.1 |
| Solyc11g006030.1.1 | Tomato | cytosol | 45.09 | 44.88 |
| KRH72959 | Soybean | cytosol, mitochondrion | 44.86 | 43.84 |
| GSMUA_Achr10P... | Banana | cytosol | 36.92 | 42.02 |
| GSMUA_Achr11P... | Banana | mitochondrion | 39.25 | 39.53 |
| GSMUA_Achr6P11310_001 | Banana | cytosol | 34.81 | 39.21 |
| CDX92016 | Canola | mitochondrion | 32.01 | 37.23 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 32.01 | 37.23 |
| GSMUA_Achr7P18640_001 | Banana | mitochondrion | 32.94 | 37.2 |
| GSMUA_Achr6P02470_001 | Banana | mitochondrion | 32.71 | 36.84 |
| Os03t0240600-01 | Rice | plastid | 38.08 | 36.63 |
| TraesCS4B01G228700.1 | Wheat | mitochondrion | 37.62 | 36.59 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 37.38 | 36.36 |
| HORVU4Hr1G064070.1 | Barley | mitochondrion | 37.15 | 36.14 |
| Zm00001d017976_P001 | Maize | mitochondrion | 38.08 | 36.06 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 36.68 | 35.52 |
| Zm00001d028374_P001 | Maize | mitochondrion | 36.92 | 35.35 |
| TraesCS7B01G105600.1 | Wheat | mitochondrion | 36.68 | 35.2 |
| Zm00001d044734_P001 | Maize | mitochondrion | 35.98 | 34.84 |
| EER92576 | Sorghum | mitochondrion | 36.92 | 34.8 |
| GSMUA_Achr3P02030_001 | Banana | plastid | 33.88 | 34.61 |
| Os06t0248500-00 | Rice | mitochondrion | 36.45 | 34.44 |
| KXG19704 | Sorghum | mitochondrion | 36.92 | 34.42 |
| CDY51529 | Canola | mitochondrion | 30.14 | 34.4 |
| CDY28714 | Canola | mitochondrion | 29.67 | 33.87 |
| EES05563 | Sorghum | mitochondrion | 35.98 | 33.33 |
| TraesCS6B01G342800.1 | Wheat | mitochondrion | 34.81 | 32.82 |
| Os02t0738200-01 | Rice | mitochondrion | 34.58 | 32.46 |
| TraesCS6A01G312600.1 | Wheat | mitochondrion | 34.35 | 32.31 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 34.11 | 32.16 |
| Zm00001d030251_P001 | Maize | cytosol | 33.18 | 31.98 |
| HORVU7Hr1G040790.2 | Barley | plastid | 36.22 | 31.76 |
| HORVU6Hr1G077120.1 | Barley | plastid | 35.28 | 29.49 |
| CDY32070 | Canola | cytosol | 28.27 | 29.37 |
| CDY40422 | Canola | cytosol | 28.27 | 29.37 |
| CDX84168 | Canola | cytosol | 27.8 | 29.31 |
| CDX75084 | Canola | cytosol | 27.57 | 29.06 |
| CDX78096 | Canola | cytosol | 26.4 | 29.05 |
| CDY59599 | Canola | cytosol | 27.57 | 28.85 |
| CDY23218 | Canola | cytosol | 26.64 | 28.79 |
| CDX79645 | Canola | cytosol | 27.34 | 28.68 |
| TraesCS5A01G088600.1 | Wheat | cytosol | 22.9 | 28.66 |
| CDX84587 | Canola | cytosol | 27.34 | 28.61 |
| KXG38738 | Sorghum | plastid | 32.94 | 28.54 |
| CDX95337 | Canola | cytosol | 27.1 | 28.36 |
| CDY16513 | Canola | cytosol | 25.47 | 25.77 |
| CDY50158 | Canola | cytosol | 25.0 | 25.66 |
| CDY59286 | Canola | cytosol | 25.23 | 25.53 |
| CDX95458 | Canola | cytosol | 24.77 | 25.42 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 25.0 | 25.42 |
| CDX92328 | Canola | cytosol | 25.0 | 25.3 |
| CDY47911 | Canola | cytosol | 24.07 | 24.41 |
| CDY53920 | Canola | cytosol | 24.53 | 24.08 |
| CDX84538 | Canola | cytosol | 22.66 | 23.15 |
| CDY08864 | Canola | cytosol | 22.66 | 23.15 |
| CDX92262 | Canola | cytosol | 22.2 | 23.0 |
| CDY01063 | Canola | cytosol | 23.6 | 22.95 |
| CDY08490 | Canola | cytosol | 23.6 | 22.85 |
| CDY53333 | Canola | cytosol | 23.83 | 22.82 |
| CDX83098 | Canola | cytosol | 23.6 | 22.8 |
| CDX73849 | Canola | cytosol | 24.77 | 22.7 |
| CDY18670 | Canola | cytosol | 23.36 | 22.57 |
| CDY69247 | Canola | cytosol | 23.13 | 22.35 |
| CDY67531 | Canola | cytosol | 23.13 | 22.15 |
| CDX99325 | Canola | cytosol | 21.73 | 21.99 |
| CDX82332 | Canola | cytosol | 21.73 | 21.93 |
| CDX75980 | Canola | cytosol | 21.26 | 21.46 |
| CDY71041 | Canola | cytosol | 20.56 | 21.31 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078FUA9 | UniProt:A0A078FUA9 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY16432 | ProteinID:CDY16432 | ProteinID:CDY16432.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00090988001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF61 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE7D84 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g12360DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FUA9]
Coordinates
chrLK032063:+:658146..659432
Molecular Weight (calculated)
47349.7 Da
IEP (calculated)
6.409
GRAVY (calculated)
-0.045
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSLRMRRR GGAKKDILTP AMSSSEEEEE EIVIPSQFQC PISYDLMKDP VIIASGITYD RENIEKWFES GNQTCPVTNT VLATLEQTPN HAIRRMIQDW
101: CVAKGSSLDR VPTPRVPISS HQAIEICGKL LSATRRGDHV VCVEMVEKMK RLGQESERNT KCFKANGVGL VLCVCFNAFS ENANASELLE DVLLLLTWMF
201: PIGSEGQANL TSTTSFTRIV GFLESGDQNA AFLVKELLSL DEANVHKLAA INGVFDALVK SIRDSSSLTS IFHMISAKPE TTSRFMELGL VNSTVEMLVD
301: SENSVCEKAL LVLDAICESN EGRTIVRGNE LVMPILVKKI LKISEFAKKS LVSVMWKICK TGDGTEVEEA LRLGAFKKLV VMLQVGCGEG TKEKVTELLK
401: MMNRHMKMNG FVDVSDSSIE FKHLKKPS
101: CVAKGSSLDR VPTPRVPISS HQAIEICGKL LSATRRGDHV VCVEMVEKMK RLGQESERNT KCFKANGVGL VLCVCFNAFS ENANASELLE DVLLLLTWMF
201: PIGSEGQANL TSTTSFTRIV GFLESGDQNA AFLVKELLSL DEANVHKLAA INGVFDALVK SIRDSSSLTS IFHMISAKPE TTSRFMELGL VNSTVEMLVD
301: SENSVCEKAL LVLDAICESN EGRTIVRGNE LVMPILVKKI LKISEFAKKS LVSVMWKICK TGDGTEVEEA LRLGAFKKLV VMLQVGCGEG TKEKVTELLK
401: MMNRHMKMNG FVDVSDSSIE FKHLKKPS
001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
Arabidopsis Description
PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.