Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16432 | Canola | cytosol | 97.89 | 97.66 |
| Bra039752.1-P | Field mustard | cytosol | 96.25 | 97.39 |
| AT1G66160.1 | Thale cress | cytosol | 73.77 | 73.09 |
| CDY27655 | Canola | mitochondrion | 58.78 | 57.31 |
| CDX99694 | Canola | mitochondrion | 58.78 | 57.31 |
| KRG97963 | Soybean | mitochondrion | 46.14 | 45.71 |
| KRH30918 | Soybean | mitochondrion | 46.14 | 45.29 |
| PGSC0003DMT400073836 | Potato | cytosol | 43.79 | 44.63 |
| Solyc11g006030.1.1 | Tomato | cytosol | 44.73 | 44.42 |
| KRH17309 | Soybean | cytosol, mitochondrion | 45.43 | 44.19 |
| KRH72959 | Soybean | cytosol, mitochondrion | 44.03 | 42.92 |
| GSMUA_Achr10P... | Banana | cytosol | 36.53 | 41.49 |
| GSMUA_Achr11P... | Banana | mitochondrion | 39.34 | 39.53 |
| GSMUA_Achr6P11310_001 | Banana | cytosol | 34.43 | 38.68 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 32.08 | 37.23 |
| GSMUA_Achr7P18640_001 | Banana | mitochondrion | 33.02 | 37.2 |
| CDX92016 | Canola | mitochondrion | 31.85 | 36.96 |
| Os03t0240600-01 | Rice | plastid | 38.17 | 36.63 |
| GSMUA_Achr6P02470_001 | Banana | mitochondrion | 32.55 | 36.58 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 37.0 | 35.91 |
| TraesCS4B01G228700.1 | Wheat | mitochondrion | 37.0 | 35.91 |
| HORVU4Hr1G064070.1 | Barley | mitochondrion | 36.77 | 35.68 |
| Zm00001d017976_P001 | Maize | mitochondrion | 37.47 | 35.4 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 36.3 | 35.07 |
| Zm00001d028374_P001 | Maize | mitochondrion | 36.53 | 34.9 |
| TraesCS7B01G105600.1 | Wheat | mitochondrion | 36.07 | 34.53 |
| EER92576 | Sorghum | mitochondrion | 36.53 | 34.36 |
| CDY51529 | Canola | mitochondrion | 29.98 | 34.13 |
| GSMUA_Achr3P02030_001 | Banana | plastid | 33.49 | 34.13 |
| Zm00001d044734_P001 | Maize | mitochondrion | 35.13 | 33.94 |
| KXG19704 | Sorghum | mitochondrion | 36.3 | 33.77 |
| CDY28714 | Canola | mitochondrion | 29.51 | 33.6 |
| Os06t0248500-00 | Rice | mitochondrion | 35.6 | 33.55 |
| EES05563 | Sorghum | mitochondrion | 35.83 | 33.12 |
| TraesCS6B01G342800.1 | Wheat | mitochondrion | 34.43 | 32.38 |
| Os02t0738200-01 | Rice | mitochondrion | 34.19 | 32.02 |
| TraesCS6A01G312600.1 | Wheat | mitochondrion | 33.96 | 31.87 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 33.72 | 31.72 |
| Zm00001d030251_P001 | Maize | cytosol | 32.79 | 31.53 |
| HORVU7Hr1G040790.2 | Barley | plastid | 35.6 | 31.15 |
| CDY40422 | Canola | cytosol | 28.34 | 29.37 |
| CDY32070 | Canola | cytosol | 28.34 | 29.37 |
| CDX84168 | Canola | cytosol | 27.87 | 29.31 |
| HORVU6Hr1G077120.1 | Barley | plastid | 34.89 | 29.1 |
| CDX75084 | Canola | cytosol | 27.63 | 29.06 |
| CDY59599 | Canola | cytosol | 27.63 | 28.85 |
| CDX78096 | Canola | cytosol | 26.23 | 28.79 |
| CDX79645 | Canola | cytosol | 27.4 | 28.68 |
| CDX84587 | Canola | cytosol | 27.4 | 28.61 |
| KXG38738 | Sorghum | plastid | 33.02 | 28.54 |
| CDY23218 | Canola | cytosol | 26.46 | 28.54 |
| CDX95337 | Canola | cytosol | 26.93 | 28.12 |
| TraesCS5A01G088600.1 | Wheat | cytosol | 22.25 | 27.78 |
| CDY16513 | Canola | cytosol | 25.76 | 26.0 |
| CDY50158 | Canola | cytosol | 25.29 | 25.9 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 25.53 | 25.89 |
| CDY59286 | Canola | cytosol | 25.53 | 25.77 |
| CDX95458 | Canola | cytosol | 25.06 | 25.66 |
| CDX92328 | Canola | cytosol | 25.29 | 25.53 |
| CDY47911 | Canola | cytosol | 24.12 | 24.41 |
| CDY53920 | Canola | cytosol | 24.59 | 24.08 |
| CDX84538 | Canola | cytosol | 22.72 | 23.15 |
| CDY08864 | Canola | cytosol | 22.72 | 23.15 |
| CDY53333 | Canola | cytosol | 24.12 | 23.04 |
| CDX83098 | Canola | cytosol | 23.89 | 23.02 |
| CDX92262 | Canola | cytosol | 22.25 | 23.0 |
| CDY01063 | Canola | cytosol | 23.65 | 22.95 |
| CDY08490 | Canola | cytosol | 23.65 | 22.85 |
| CDY18670 | Canola | cytosol | 23.65 | 22.8 |
| CDX73849 | Canola | cytosol | 24.82 | 22.7 |
| CDY69247 | Canola | cytosol | 23.42 | 22.57 |
| CDY67531 | Canola | cytosol | 23.18 | 22.15 |
| CDX99325 | Canola | cytosol | 21.78 | 21.99 |
| CDX82332 | Canola | cytosol | 21.78 | 21.93 |
| CDY71041 | Canola | cytosol | 20.84 | 21.55 |
| CDX75980 | Canola | cytosol | 21.31 | 21.46 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078ILT0 | UniProt:A0A078ILT0 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY50319 | ProteinID:CDY50319 | ProteinID:CDY50319.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00096414001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF61 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE3162 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng19020DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078ILT0]
Coordinates
chrLK032900:-:23935..25218
Molecular Weight (calculated)
47237.7 Da
IEP (calculated)
7.029
GRAVY (calculated)
-0.021
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSLRMRRR GGAKKDILTP AISSSEEEEE IVIPSQFQCP ISYDLMKDPV IIASGITYDR ENIEKWFESG NQTCPVTNTV LATLEQTPNH AIRRMIQEWC
101: VAKGSSLDRV PTPRVPISSH QAIEICGKLL SATRRGDHVV CVEMVEKMKR LVQESERNTK CFKANGVGLV LCVCFNAFSE NANASELLED VLLLLTWMFP
201: IGSKGQANLT STTSFTRIVG FLKSGDQNAA FLVKELLSLD EANVDKLATI NGVFDALVKS IRDSSSLTSI FHMISAKPET TSRFMELGLV NSTVEMLVDS
301: ENSVCEKALL VLDAICESNE GRTIVRGNEL VMPILVKKIL KISEFAKKSL VSVMWKICKT GDGTEVEEAL RLGAFKKLVV MLQVGCGEGT KEKVTELLKM
401: MNRHMKTNGF VDVSDSSIEF MHLKKPS
101: VAKGSSLDRV PTPRVPISSH QAIEICGKLL SATRRGDHVV CVEMVEKMKR LVQESERNTK CFKANGVGLV LCVCFNAFSE NANASELLED VLLLLTWMFP
201: IGSKGQANLT STTSFTRIVG FLKSGDQNAA FLVKELLSLD EANVDKLATI NGVFDALVKS IRDSSSLTSI FHMISAKPET TSRFMELGLV NSTVEMLVDS
301: ENSVCEKALL VLDAICESNE GRTIVRGNEL VMPILVKKIL KISEFAKKSL VSVMWKICKT GDGTEVEEAL RLGAFKKLVV MLQVGCGEGT KEKVTELLKM
401: MNRHMKTNGF VDVSDSSIEF MHLKKPS
001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
Arabidopsis Description
PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.