CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028374_P001	Maize	mitochondrion	92.73	94.18
TraesCS4D01G229900.1	Wheat	mitochondrion	79.07	81.59
TraesCS4B01G228700.1	Wheat	mitochondrion	79.07	81.59
Os03t0240600-01	Rice	plastid	79.52	81.12
HORVU4Hr1G064070.1	Barley	mitochondrion	77.53	80.0
GSMUA_Achr6P11310_001	Banana	cytosol	44.93	53.68
GSMUA_Achr11P...	Banana	mitochondrion	50.22	53.65
GSMUA_Achr10P...	Banana	cytosol	42.29	51.06
KXG19704	Sorghum	mitochondrion	51.32	50.76
GSMUA_Achr7P18640_001	Banana	mitochondrion	42.07	50.4
GSMUA_Achr6P02470_001	Banana	mitochondrion	40.75	48.68
VIT_01s0011g06140.t01	Wine grape	mitochondrion	46.04	47.29
EES05563	Sorghum	mitochondrion	48.02	47.19
KRH48691	Soybean	cytosol	42.29	43.94
GSMUA_Achr3P02030_001	Banana	plastid	39.87	43.2
KXG38738	Sorghum	plastid	46.92	43.12
KRH39018	Soybean	mitochondrion	41.41	42.92
KRH72959	Soybean	cytosol, mitochondrion	40.75	42.24
KRH17309	Soybean	cytosol, mitochondrion	40.75	42.14
KRG97963	Soybean	mitochondrion	39.87	42.0
KRH30918	Soybean	mitochondrion	39.87	41.61
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	41.19	41.46
Solyc01g005160.2.1	Tomato	mitochondrion	40.09	40.44
PGSC0003DMT400073836	Potato	cytosol	37.22	40.33
Solyc04g008100.1.1	Tomato	cytosol	38.99	40.05
Solyc11g006030.1.1	Tomato	cytosol	37.22	39.3
PGSC0003DMT400075778	Potato	mitochondrion	37.89	38.91
CDY16432	Canola	cytosol	34.8	36.92
Bra039752.1-P	Field mustard	cytosol	34.14	36.73
CDY50319	Canola	cytosol	34.36	36.53
AT1G66160.1	Thale cress	cytosol	34.14	35.96
Bra025442.1-P	Field mustard	mitochondrion	34.58	35.84
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	33.92	35.4
CDY27655	Canola	mitochondrion	34.14	35.39
CDX99694	Canola	mitochondrion	33.92	35.16
EES06938	Sorghum	extracellular	30.84	34.4
AT3G02840.1	Thale cress	mitochondrion	27.75	33.25
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.43	32.61
CDX92016	Canola	mitochondrion	26.43	32.61
Bra040605.1-P	Field mustard	mitochondrion	26.65	32.27
CDY28714	Canola	mitochondrion	26.65	32.27
Bra001067.1-P	Field mustard	mitochondrion	25.99	32.07
CDY51529	Canola	mitochondrion	26.43	32.0
OQU85086	Sorghum	cytosol	28.41	30.21
EES06927	Sorghum	cytosol	28.19	30.19
EES13136	Sorghum	cytosol	27.31	29.11
EES03937	Sorghum	plastid	25.55	28.43
EES11341	Sorghum	cytosol	25.55	28.16
OQU81614	Sorghum	cytosol	22.69	25.88
EES05205	Sorghum	cytosol	25.33	25.39
EES07426	Sorghum	cytosol	23.79	25.17
KXG26241	Sorghum	cytosol	25.55	25.11
EER95229	Sorghum	cytosol	25.11	24.84
KXG23010	Sorghum	cytosol	24.01	24.01
OQU80253	Sorghum	mitochondrion	11.01	22.94
OQU81548	Sorghum	mitochondrion	22.25	22.6
KXG22102	Sorghum	mitochondrion	22.03	21.88
OQU81292	Sorghum	mitochondrion	10.13	21.4

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8056822	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:C5WRK6	EnsemblPlants:EER92576	ProteinID:EER92576	ProteinID:EER92576.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	EnsemblPlantsGene:SORBI_3001G441100
SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.11757	UniParc:UPI0001A8272E	InterPro:Ubox_domain	RefSeq:XP_002465578.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71899741..71901707

Molecular Weight (calculated)

48022.4 Da

IEP (calculated)

8.162

GRAVY (calculated)

0.174

Length

454 amino acids

Sequence
(BLAST)

001: MALLVRRARR AATKAAVSLG GGGGSGSSSV ELAIPAHYRC PISLDLMRDP VTAPTGITYD RESIEAWLDT GRATCPVTHA PLRHEDLVPN HAIRRVIQDW
101: CVANRSRGVE RIPTPKIPVT PVQASELLFD LAGCARRRDA AAPARCAEVV AKIKALARDS ERNRRCFASI GTGRVLAAAF ESLASAAAAD AAPAGRVLED
201: ILAALVCMMP LDEEAARTLG LPSSLGSLVA IAENGTLAGR LNAVLAIKEV VSCDGAFTDL SGKVDEIVDA LAKIIKSPIC PQATKAGMVA TYHLALYDER
301: VAARLAAAGL VPVLIEALVD ADKSMSEKAL AVLDAVLASE EGRASARAHA LAVPMLVKKM FRVSDLATQL AVSAMWRLGK AHSDGEEEEN AVTRCLVEAL
401: RVGAFQKLLL LLQVGCRDAT KEKATELLKL LNKYKSVGEC VDAVDFRGLN KLSS

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.