Factsheet for Solyc01g005160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	94.22	94.01
Solyc04g008100.1.1	Tomato	cytosol	61.78	62.9
VIT_01s0011g06140.t01	Wine grape	mitochondrion	57.56	58.6
Solyc11g006030.1.1	Tomato	cytosol	46.89	49.07
GSMUA_Achr6P02470_001	Banana	mitochondrion	40.44	47.89
GSMUA_Achr7P18640_001	Banana	mitochondrion	40.0	47.49
GSMUA_Achr6P11310_001	Banana	cytosol	38.67	45.79
GSMUA_Achr10P...	Banana	cytosol	38.22	45.74
GSMUA_Achr11P...	Banana	mitochondrion	42.22	44.71
TraesCS6B01G342800.1	Wheat	mitochondrion	44.0	43.61
TraesCS6A01G312600.1	Wheat	mitochondrion	43.56	43.08
Zm00001d017976_P001	Maize	mitochondrion	42.89	42.7
TraesCS6D01G292200.1	Wheat	mitochondrion	42.89	42.51
Os03t0240600-01	Rice	plastid	42.0	42.47
HORVU4Hr1G064070.1	Barley	mitochondrion	41.33	42.27
TraesCS4B01G228700.1	Wheat	mitochondrion	40.89	41.82
TraesCS7B01G105600.1	Wheat	mitochondrion	41.11	41.48
TraesCS7D01G201600.1	Wheat	mitochondrion	40.67	41.4
TraesCS4D01G229900.1	Wheat	mitochondrion	40.44	41.36
Os02t0738200-01	Rice	mitochondrion	41.78	41.23
EES05563	Sorghum	mitochondrion	42.0	40.91
Os06t0248500-00	Rice	mitochondrion	41.11	40.84
GSMUA_Achr3P02030_001	Banana	plastid	37.78	40.57
Zm00001d028374_P001	Maize	mitochondrion	40.22	40.49
EER92576	Sorghum	mitochondrion	40.44	40.09
Zm00001d044734_P001	Maize	mitochondrion	39.33	40.05
KXG19704	Sorghum	mitochondrion	40.0	39.22
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	15.56	39.11
HORVU6Hr1G077120.1	Barley	plastid	44.0	38.67
HORVU7Hr1G040790.2	Barley	plastid	40.22	37.09
Zm00001d030251_P001	Maize	cytosol	33.78	34.23
TraesCS5A01G088600.1	Wheat	cytosol	25.56	33.63
Solyc11g068920.1.1	Tomato	cytosol	28.67	31.93
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	28.22	31.05
KXG38738	Sorghum	plastid	34.0	30.97
Solyc01g007010.2.1	Tomato	cytosol	28.0	30.88
Solyc01g107980.2.1	Tomato	cytosol	28.44	30.84
Solyc01g007020.2.1	Tomato	cytosol	27.78	30.64
Solyc01g009330.1.1	Tomato	cytosol	28.89	30.52
Solyc01g009320.1.1	Tomato	cytosol	26.0	27.99
Solyc01g080920.2.1	Tomato	cytosol	24.44	26.89
Solyc06g074140.1.1	Tomato	cytosol	24.89	26.67
Solyc01g007050.1.1	Tomato	cytosol	24.89	26.6
Solyc11g068940.1.1	Tomato	cytosol	24.22	25.77
Solyc01g007030.2.1	Tomato	cytosol	12.0	25.59
Solyc05g056500.1.1	Tomato	cytosol	22.67	25.44
Solyc11g005700.1.1	Tomato	cytosol	23.11	24.76
Solyc04g077610.2.1	Tomato	cytosol	20.89	22.43
Solyc04g071030.1.1	Tomato	cytosol	21.11	22.25

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:ADI46215.1	InterPro:ARM-like	InterPro:ARM-type_fold
EMBL:DQ118759	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF102	UniProt:Q1WM08	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g005160.2
EnsemblPlants:Solyc01g005160.2.1	UniParc:UPI0000D4FC02	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q1WM08]

Coordinates

chr1:+:137781..139489

Molecular Weight (calculated)

50154.3 Da

IEP (calculated)

8.693

GRAVY (calculated)

-0.086

Length

450 amino acids

Sequence
(BLAST)

001: MIATWRKKRT EKRVTKRGFM KKTNMELVIP SQFTCPISLD LMKDPVTLST GITYDRENIE KWINEGGNQT CPITNQELKS YGNGIVDPVL IPNHNIRKMI
101: QQWCVENKEH GIDRIPTPRI PISSSDVSEL LAKITNSSKL EMEKSSSCEE LVTSVKNLAS ESDRNKCCFV TNGIGKVLSS AFLELSKGKN AKNASTEEVI
201: LSTLTLFLPL DVKSKTILGS ISSLRSIAWF LKNGSLSSRR NAVVVLREIM KLEEQEKVEI LLNIEGALEG LVKLVKEPIC PNTTKASLLT IYYMVNNSSS
301: QSSRSRFVDV GLVEMLIEIL VNCDKSICEK ALGVLDGILR YEEGVKRASS YALSVPVLVK KLLRVSDLAT EFSVSILWKI LCKNENNGDC GILVEALQVG
401: AFQKLLVILQ VGCSETTKEK ASELLKLLNV HRDRAECVDS LDFKSLKRTF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.