Factsheet for Solyc01g107980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066588	Potato	cytosol	97.11	97.11
VIT_03s0063g00180.t01	Wine grape	cytosol	76.39	76.39
KRH50316	Soybean	cytosol, plasma membrane, plastid	74.7	74.88
KRH70657	Soybean	cytosol	74.22	74.22
CDY50158	Canola	cytosol	69.16	68.82
Bra038205.1-P	Field mustard	cytosol	68.92	68.59
CDX95458	Canola	cytosol	68.43	68.11
CDX92328	Canola	cytosol	68.43	67.14
Bra022415.1-P	Field mustard	cytosol	68.19	67.06
Bra022417.1-P	Field mustard	cytosol	68.19	67.06
CDX99233	Canola	cytosol, peroxisome, plastid	67.71	66.75
AT3G19380.1	Thale cress	cytosol, golgi, plastid	67.47	66.51
CDY59286	Canola	cytosol	67.47	66.19
CDY16513	Canola	cytosol	67.47	66.19
Bra014206.1-P	Field mustard	cytosol	67.47	66.19
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	66.75	65.8
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	48.67	58.55
GSMUA_Achr6P25670_001	Banana	cytosol	55.42	53.74
EES06938	Sorghum	extracellular	52.53	53.56
GSMUA_Achr1P13220_001	Banana	cytosol	51.08	53.54
TraesCS6B01G268300.1	Wheat	extracellular	52.05	53.07
Zm00001d050712_P001	Maize	extracellular, plastid	52.05	52.81
TraesCS6D01G237900.1	Wheat	extracellular	51.57	52.58
TraesCS6A01G256700.1	Wheat	extracellular	51.57	52.58
Os02t0548700-00	Rice	cytosol, extracellular, plastid	52.77	52.52
Zm00001d016764_P001	Maize	extracellular	51.33	50.96
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	15.66	36.31
Solyc11g068920.1.1	Tomato	cytosol	29.4	30.2
Solyc04g008100.1.1	Tomato	cytosol	32.05	30.09
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	28.67	29.1
Solyc05g056500.1.1	Tomato	cytosol	27.71	28.68
Solyc01g005160.2.1	Tomato	mitochondrion	30.84	28.44
Solyc01g007010.2.1	Tomato	cytosol	27.95	28.43
Solyc01g007020.2.1	Tomato	cytosol	27.95	28.43
Solyc01g009330.1.1	Tomato	cytosol	29.16	28.4
Solyc11g006030.1.1	Tomato	cytosol	28.19	27.21
Solyc01g009320.1.1	Tomato	cytosol	27.23	27.03
Solyc11g068940.1.1	Tomato	cytosol	27.23	26.71
Solyc11g005700.1.1	Tomato	cytosol	25.3	25.0
Solyc06g074140.1.1	Tomato	cytosol	24.58	24.29
Solyc01g007030.2.1	Tomato	cytosol	12.05	23.7
Solyc04g077610.2.1	Tomato	cytosol	23.86	23.63
Solyc01g007050.1.1	Tomato	cytosol	23.61	23.28
Solyc01g080920.2.1	Tomato	cytosol	21.93	22.25
Solyc04g071030.1.1	Tomato	cytosol	21.93	21.31

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4B314	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g107980.2	EnsemblPlants:Solyc01g107980.2.1	UniParc:UPI0002768053
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4B314]

Coordinates

chr1:-:95361899..95363459

Molecular Weight (calculated)

45394.0 Da

IEP (calculated)

6.904

GRAVY (calculated)

0.109

Length

415 amino acids

Sequence
(BLAST)

001: MPASLDPLDV GVQIPYHFRC PISLELMRDP VTVCTGQTYD RQSIESWVAT GNTTCPVTRA PLSDFTLIPN HTLRRLIQEW CVANRAFGVE RIPTPKQPAD
101: PSLVRSLLNQ AAAQSNHMNS RVAALRRLRG LARDSEKNRS VISANNAREI LLAIVFSRMD SDASELHHES LAILSMFPLS EPECVFVASD PGRVGYLVAM
201: LFHPSIDVRV NSAALIETVV AGMRSPEFRA QISNADDVFE GVVGILNYPL AYPRALKVGI KALFALCLVK QHRQRAVSAG AVEALIDRLQ DFEKCDAERA
301: LATIELLSRI PSGCAALASH ALTVPLLVKI ILKISERATE YAAGALLSLC SASEQAQKEA VAAGVLIQLL LLVQSDCTER AKRKAQMLLK QLRDCWPEDS
401: IANTDDFACS DVVPF

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.