Factsheet for TraesCS6A01G256700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 3
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G237900.1	Wheat	extracellular	98.53	98.53
TraesCS6B01G268300.1	Wheat	extracellular	98.03	98.03
EES06938	Sorghum	extracellular	86.24	86.24
Zm00001d050712_P001	Maize	extracellular, plastid	84.28	83.86
Os02t0548700-00	Rice	cytosol, extracellular, plastid	85.26	83.21
Zm00001d016764_P001	Maize	extracellular	83.05	80.86
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	56.27	66.38
GSMUA_Achr1P13220_001	Banana	cytosol	61.67	63.38
GSMUA_Achr6P25670_001	Banana	cytosol	61.92	58.88
PGSC0003DMT400066588	Potato	cytosol	52.83	51.81
Solyc01g107980.2.1	Tomato	cytosol	52.58	51.57
KRH50316	Soybean	cytosol, plasma membrane, plastid	50.86	50.0
CDY50158	Canola	cytosol	50.86	49.64
Bra038205.1-P	Field mustard	cytosol	50.86	49.64
KRH70657	Soybean	cytosol	50.61	49.64
CDX92328	Canola	cytosol	51.35	49.41
CDX99233	Canola	cytosol, peroxisome, plastid	51.11	49.41
CDX95458	Canola	cytosol	50.61	49.4
VIT_03s0063g00180.t01	Wine grape	cytosol	50.12	49.16
Bra022415.1-P	Field mustard	cytosol	50.86	49.05
Bra022417.1-P	Field mustard	cytosol	50.86	49.05
AT3G19380.1	Thale cress	cytosol, golgi, plastid	49.88	48.22
Bra014206.1-P	Field mustard	cytosol	49.63	47.75
CDY16513	Canola	cytosol	49.63	47.75
CDY59286	Canola	cytosol	49.39	47.52
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	48.65	47.03
TraesCS2A01G307000.1	Wheat	cytosol	31.45	33.07
TraesCS3A01G376900.1	Wheat	cytosol	28.99	28.23
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	26.29	27.94
TraesCS2A01G298000.1	Wheat	cytosol	29.24	27.61
TraesCS6A01G382300.1	Wheat	cytosol	28.01	27.01
TraesCS6A01G382800.1	Wheat	cytosol	27.76	26.78
TraesCS6A01G312600.1	Wheat	mitochondrion	29.48	26.37
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	27.76	25.62
TraesCS2A01G450300.1	Wheat	cytosol	24.57	23.98
TraesCS6A01G263700.1	Wheat	cytosol	25.06	23.72
TraesCS1A01G274800.1	Wheat	mitochondrion	26.04	23.4
TraesCS4A01G060800.1	Wheat	cytosol	25.8	22.88
TraesCS5A01G088600.1	Wheat	cytosol	19.16	22.81
TraesCS6A01G176800.1	Wheat	cytosol	24.08	22.69

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6A01G256700	EnsemblPlants:TraesCS6A01G256700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:478308845..478310068

Molecular Weight (calculated)

42395.5 Da

IEP (calculated)

8.134

GRAVY (calculated)

0.169

Length

407 amino acids

Sequence
(BLAST)

001: MPGSVPLALG LDTVGLQVPW YFRCPISLEL MQDPVTVATG QTYDRASIES WVATGNTTCP VTRAPLADFT LIPNHTLRRL IQEWCVAHRS LGVERIPTPK
101: QPADPDLIRS LIAQGPALPV LRKLRALARE SDKNRLVMAT HETRAALVEM AFGGSAEEAQ AEAMAVLALV GMGEAEAVDV VGREERVTRL GKVLGSQGTT
201: LEAKVNAGAV VEAAAAVSGA EARVVLGAAD GVIEGLVALV DEKANARAVR IGIRGLFALC LAKENRQRAV SAGAASALAR RVAEGGCVGE LERALAAVER
301: LSRTEGGREA VVSGAGGGAA VVIALVRAMS GRGAEHAAGA LVAVVGGSEG LQLEAVRAGA MSQLLMMVQG GCSERAKRKA QHLLKLLRSA WPTTDSMANS
401: ADFLQPY

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.