CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83098	Canola	cytosol	97.76	98.65
AT3G49810.1	Thale cress	cytosol	94.18	93.97
CDY18670	Canola	cytosol	76.51	77.2
CDY69247	Canola	cytosol	76.51	77.2
VIT_00s0471g00010.t01	Wine grape	cytosol	76.73	76.73
KRH77156	Soybean	cytosol	73.38	73.05
KRH58142	Soybean	cytosol	68.9	69.37
GSMUA_Achr8P04940_001	Banana	cytosol	66.0	68.29
GSMUA_Achr2P08620_001	Banana	cytosol	64.65	66.59
GSMUA_Achr3P25750_001	Banana	cytosol	62.19	64.8
KRH28330	Soybean	plastid	73.6	64.01
Zm00001d019807_P001	Maize	extracellular	13.42	63.83
GSMUA_Achr4P07400_001	Banana	cytosol	58.39	60.14
EER95229	Sorghum	cytosol	61.07	59.48
Zm00001d028294_P001	Maize	cytosol	60.85	59.26
HORVU4Hr1G066070.1	Barley	cytosol	60.63	58.91
Zm00001d048008_P001	Maize	cytosol	60.63	58.53
Os03t0232600-01	Rice	cytosol	59.96	58.39
TraesCS4A01G060800.1	Wheat	cytosol	59.96	58.39
TraesCS4D01G237600.1	Wheat	cytosol	59.96	58.39
TraesCS4B01G236200.1	Wheat	cytosol	59.73	58.17
Zm00001d000044_P001	Maize	cytosol	23.49	45.45
CDY50158	Canola	cytosol	25.95	27.82
CDX95458	Canola	cytosol	25.5	27.34
CDX92328	Canola	cytosol	25.5	26.95
CDX99233	Canola	cytosol, peroxisome, plastid	25.28	26.84
CDY08864	Canola	cytosol	23.94	25.54
CDY59286	Canola	cytosol	23.94	25.3
CDX84538	Canola	cytosol	23.49	25.06
CDY16513	Canola	cytosol	23.71	25.06
CDX78096	Canola	cytosol	21.48	24.68
CDX92262	Canola	cytosol	22.37	24.21
CDX84587	Canola	cytosol	22.15	24.21
CDY59599	Canola	cytosol	22.15	24.21
CDX95337	Canola	cytosol	22.15	24.21
CDY50319	Canola	cytosol	23.04	24.12
CDX75980	Canola	cytosol	22.82	24.06
CDY32070	Canola	cytosol	22.15	24.03
CDY40422	Canola	cytosol	22.15	24.03
CDX84168	Canola	cytosol	21.7	23.89
CDY16432	Canola	cytosol	22.82	23.83
CDY23218	Canola	cytosol	21.03	23.74
CDX99325	Canola	cytosol	22.37	23.64
CDX82332	Canola	cytosol	22.37	23.58
CDX79645	Canola	cytosol	21.48	23.53
CDX75084	Canola	cytosol	21.25	23.4
CDY01063	Canola	cytosol	22.82	23.18
CDY71041	Canola	cytosol	21.25	23.0
CDY53920	Canola	cytosol	22.15	22.71
CDY08490	Canola	cytosol	22.37	22.62
CDY67531	Canola	cytosol	22.37	22.37
CDY47911	Canola	cytosol	21.03	22.27
CDY27655	Canola	mitochondrion	21.48	21.92
CDY51529	Canola	mitochondrion	18.34	21.87
CDX99694	Canola	mitochondrion	21.25	21.69
CDX73849	Canola	cytosol	22.6	21.63
CDY28714	Canola	mitochondrion	18.12	21.6
CDX92016	Canola	mitochondrion	17.0	20.65
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	17.0	20.65

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078IWG6	UniProt:A0A078IWG6	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY53333	ProteinID:CDY53333	ProteinID:CDY53333.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00010459001	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF105	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EDAE16	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaCnng24910DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IWG6]

Coordinates

chrLK033189:+:28728..30945

Molecular Weight (calculated)

48700.9 Da

IEP (calculated)

7.248

GRAVY (calculated)

0.122

Length

447 amino acids

Sequence
(BLAST)

001: MPMFQPLKRD GLVGFEGGGD GQVLDLDTAV KDGLLGGVNG GGGVVDEKID LKTMIKELDL QDIPSVFICP ISLEPMQDPV TLCTGQTYER SNIHKWFSLG
101: HLTCPTTMQE LWDDAVTPNR TLHHLIYTWF SQKYVLMKKR SEDVQGRAIE VLGTLKKAKG QARVHALSEL KQIVVAHLMA RKTVVEEGGV SVISSLLGPF
201: TSHAVGSEVV AILVSLDLDS DSKSGLMQPA KVSLIVDMLN DGSNETKVNC VRLIRGLVEE KGFRPELVSS HSLLVGLIRL VKDKRHRNGV SPALGLLKPI
301: SAHKQVRSLM VRVGAVPQLV DILPSLDPDC LESALFVLDA LCSDMEGRVA VKDSANTIPY TVKVLMRVTE SCTNYALSIL WSVCKLAPEE CSPLAVEVGL
401: AAKLLLVIQS GCDPALKQRS AELLKLCSLH YSDTMFISKC KLTRTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.