CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001424.1-P	Field mustard	cytosol	99.36	99.15
CDY53920	Canola	cytosol	86.72	92.89
CDY01063	Canola	cytosol	74.95	79.55
CDY47911	Canola	cytosol	71.73	79.38
CDY08490	Canola	cytosol	74.73	78.96
CDY67531	Canola	cytosol	74.73	78.08
AT3G11840.1	Thale cress	cytosol	75.16	76.97
VIT_08s0105g00200.t01	Wine grape	cytosol	42.83	49.26
KRH72180	Soybean	cytosol	23.13	46.55
KRH68013	Soybean	cytosol	27.62	43.58
GSMUA_Achr11P...	Banana	cytosol	32.12	40.98
CDX84168	Canola	cytosol	34.69	39.9
CDX79645	Canola	cytosol	34.69	39.71
Solyc01g007050.1.1	Tomato	cytosol	35.76	39.67
CDY40422	Canola	cytosol	34.9	39.56
CDY32070	Canola	cytosol	34.9	39.56
PGSC0003DMT400054946	Potato	cytosol	35.55	39.43
CDX84587	Canola	cytosol	34.48	39.36
CDX75084	Canola	cytosol	34.05	39.16
CDX95337	Canola	cytosol	32.55	37.16
CDX78096	Canola	cytosol	30.84	37.02
CDY23218	Canola	cytosol	31.26	36.87
CDY59599	Canola	cytosol	31.91	36.43
CDX95458	Canola	cytosol	23.77	26.62
CDX92328	Canola	cytosol	23.98	26.48
CDY50158	Canola	cytosol	23.55	26.38
CDX99233	Canola	cytosol, peroxisome, plastid	23.77	26.37
CDY16513	Canola	cytosol	23.55	26.0
CDY59286	Canola	cytosol	23.55	26.0
CDY27655	Canola	mitochondrion	23.98	25.57
CDX99694	Canola	mitochondrion	23.98	25.57
CDY50319	Canola	cytosol	22.7	24.82
CDY16432	Canola	cytosol	22.7	24.77
CDX92262	Canola	cytosol	21.41	24.21
CDY08864	Canola	cytosol	21.2	23.63
CDX75980	Canola	cytosol	21.41	23.58
CDX84538	Canola	cytosol	20.98	23.39
CDX92016	Canola	mitochondrion	18.2	23.1
CDX99325	Canola	cytosol	20.77	22.93
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	17.99	22.83
CDY53333	Canola	cytosol	21.63	22.6
CDX82332	Canola	cytosol	20.34	22.41
CDX83098	Canola	cytosol	21.2	22.35
CDY28714	Canola	mitochondrion	17.77	22.13
CDY71041	Canola	cytosol	19.49	22.03
CDY51529	Canola	mitochondrion	17.34	21.6
CDY18670	Canola	cytosol	19.91	20.99
CDY69247	Canola	cytosol	19.49	20.54

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CCB3	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX73849	ProteinID:CDX73849	ProteinID:CDX73849.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111554001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF24	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EDC917	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:

Description

BnaA03g31980D

Coordinates

chrLK031800:+:215939..218125

Molecular Weight (calculated)

52443.0 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.076

Length

467 amino acids

Sequence
(BLAST)

001: MDHEDEEIEI PNYFICPISL DIMKDPVIAV SGITYDRESI DKWLEKVSSC PVTKQPLSSD SDLTPNHTLR RLIQHWCVEN ATLGVVRIPT PRIPPGKPNV
101: VEEIKNLKKF GDEALAREDT LRKLEVLAME GETNRRLMHE GGVHRLLILF VVKCTRKEEE EEAQRRIKVQ LDESLRLLHM IGVPLNDART ILMENDQILE
201: SLSLVLNQQN FLNKAYTIVL LRNLTENTSS HIVERLNPEI LKGIIGFLKE VVSSFNRTSP NVSDTAQSSN PRVRNKVHSK LDYNLVIKQA VTAALMILLE
301: TSSWSRNKHI LIELGAVSQL IELEISSTGE KRATELVLGV LSRLCCCTNG RAEILAHGGG LAIMTKRLLG VSIAADDRAL FILSTVSKLS PEKAVVEEMV
401: CVGTVEKLCT VLRVDCGLSL KEKAKEILSD HFDELKKFPC IDVRLLTKFL SSSHEDLLAE FYSKLNV

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.