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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08490 Canola cytosol 77.41 79.86
CDY01063 Canola cytosol 76.97 79.77
CDY47911 Canola cytosol 72.81 78.67
Bra038683.1-P Field mustard cytosol 76.32 77.85
CDY53920 Canola cytosol 73.9 77.29
Bra034806.1-P Field mustard cytosol 78.95 77.09
CDY67531 Canola cytosol 74.78 76.29
CDX73849 Canola cytosol 76.97 75.16
Bra001424.1-P Field mustard cytosol 76.75 74.79
VIT_08s0105g00200.t01 Wine grape cytosol 43.86 49.26
KRH72180 Soybean cytosol 22.59 44.4
KRH68013 Soybean cytosol 28.73 44.26
GSMUA_Achr11P... Banana cytosol 33.55 41.8
Solyc01g007050.1.1 Tomato cytosol 37.06 40.14
AT2G35930.1 Thale cress cytosol 35.96 39.9
PGSC0003DMT400054946 Potato cytosol 36.4 39.43
AT3G52450.1 Thale cress cytosol 35.09 36.78
AT3G19380.1 Thale cress cytosol, golgi, plastid 24.56 26.6
AT1G49780.1 Thale cress cytoskeleton, cytosol, vacuole 23.46 25.42
AT1G66160.1 Thale cress cytosol 23.68 25.06
AT3G49810.1 Thale cress cytosol 23.25 23.66
AT5G37490.1 Thale cress cytosol, nucleus, peroxisome 22.15 23.22
AT5G65920.1 Thale cress cytosol 22.37 22.97
AT3G18710.1 Thale cress cytosol 20.61 22.65
AT5G09800.1 Thale cress cytosol 20.18 22.49
AT3G02840.1 Thale cress mitochondrion 18.64 22.43
AT5G64660.1 Thale cress cytosol 20.39 22.14
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1EntrezGene:820357ProteinID:AAF23200.1ProteinID:AEE75107.2
EMBL:AK228955EMBL:AK317081InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT3G11840EnsemblPlantsGene:AT3G11840
RefSeq:AT3G11840TAIR:AT3G11840RefSeq:AT3G11840-TAIR-GEnsemblPlants:AT3G11840.1TAIR:AT3G11840.1EMBL:AY084238
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0006464GO:GO:0006950
GO:GO:0006952GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_566402.2PFAM:PF04564
PO:PO:0000013PO:PO:0000035PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0006070PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009009PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF24Symbol:PUB24
UniProt:Q9SF15SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniParc:UPI000005EA65InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
Coordinates
chr3:-:3736578..3738208
Molecular Weight (calculated)
51289.8 Da
IEP (calculated)
6.965
GRAVY (calculated)
-0.114
Length
456 amino acids
Sequence
(BLAST)
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.