Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79645 | Canola | cytosol | 90.51 | 91.18 |
| CDX84587 | Canola | cytosol | 89.78 | 90.22 |
| Bra023044.1-P | Field mustard | cytosol | 89.78 | 90.22 |
| Bra017278.1-P | Field mustard | cytosol | 90.27 | 90.05 |
| CDY40422 | Canola | cytosol | 90.27 | 90.05 |
| CDY32070 | Canola | cytosol | 89.78 | 89.56 |
| CDX75084 | Canola | cytosol | 88.08 | 89.16 |
| Bra005309.1-P | Field mustard | cytosol | 83.45 | 88.63 |
| CDX84168 | Canola | cytosol | 87.35 | 88.42 |
| AT3G52450.1 | Thale cress | cytosol | 80.54 | 76.09 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 59.37 | 59.37 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 59.12 | 59.12 |
| KRH68014 | Soybean | cytosol | 58.39 | 57.14 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.82 | 56.77 |
| Solyc01g007030.2.1 | Tomato | cytosol | 28.95 | 56.4 |
| PGSC0003DMT400055045 | Potato | cytosol | 28.95 | 56.4 |
| KRH35744 | Soybean | cytosol | 57.42 | 56.32 |
| KRG96257 | Soybean | cytosol | 56.93 | 55.85 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 54.99 | 55.66 |
| PGSC0003DMT400054949 | Potato | cytosol | 54.99 | 55.66 |
| KRG96268 | Soybean | cytosol | 56.69 | 55.61 |
| KRH72176 | Soybean | cytosol | 56.45 | 55.5 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 54.99 | 55.26 |
| Solyc01g007020.2.1 | Tomato | cytosol | 54.74 | 55.15 |
| KRH32856 | Soybean | cytosol | 56.2 | 55.0 |
| PGSC0003DMT400055050 | Potato | cytosol | 52.31 | 54.85 |
| Solyc01g007010.2.1 | Tomato | cytosol | 54.26 | 54.66 |
| PGSC0003DMT400055051 | Potato | cytosol | 52.31 | 54.57 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.08 | 54.35 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 23.6 | 54.19 |
| PGSC0003DMT400054948 | Potato | cytosol | 37.23 | 53.68 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 46.23 | 53.52 |
| PGSC0003DMT400054947 | Potato | cytosol | 38.2 | 51.99 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 44.77 | 50.14 |
| GSMUA_Achr11P... | Banana | cytosol | 45.5 | 50.13 |
| GSMUA_Achr10P... | Banana | cytosol | 44.28 | 49.86 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 47.45 | 46.1 |
| Os04t0686000-01 | Rice | cytosol | 46.23 | 46.0 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 46.96 | 45.95 |
| EES06927 | Sorghum | cytosol | 47.2 | 45.75 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 46.47 | 45.48 |
| OQU85086 | Sorghum | cytosol | 47.2 | 45.43 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 45.99 | 45.0 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 45.99 | 44.79 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 45.74 | 44.76 |
| EES03937 | Sorghum | plastid | 44.04 | 44.36 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 45.5 | 44.31 |
| Os01t0865700-00 | Rice | plastid | 43.8 | 44.23 |
| Zm00001d042738_P001 | Maize | cytosol | 43.55 | 43.87 |
| Os02t0539200-01 | Rice | cytosol | 46.72 | 43.44 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 44.04 | 43.3 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.8 | 43.17 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 43.31 | 43.1 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.8 | 43.06 |
| HORVU6Hr1G089560.1 | Barley | plastid | 47.2 | 43.02 |
| HORVU6Hr1G089590.1 | Barley | plastid | 47.2 | 42.92 |
| EES13136 | Sorghum | cytosol | 43.8 | 42.25 |
| Zm00001d016730_P001 | Maize | cytosol | 44.77 | 42.2 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 42.58 | 40.6 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 42.34 | 40.37 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 42.09 | 40.14 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 42.09 | 40.14 |
| Zm00001d003745_P001 | Maize | nucleus | 43.55 | 39.96 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.96 | 39.8 |
| KXG26241 | Sorghum | cytosol | 44.04 | 39.18 |
| AT3G11840.1 | Thale cress | cytosol | 39.9 | 35.96 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.52 | 34.19 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.52 | 34.19 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 35.28 | 33.96 |
| AT3G19380.1 | Thale cress | cytosol, golgi, plastid | 32.36 | 31.59 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 25.55 | 31.25 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 31.63 | 30.73 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 32.12 | 30.56 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 45.5 | 30.26 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 31.87 | 30.25 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 31.87 | 30.25 |
| AT1G49780.1 | Thale cress | cytoskeleton, cytosol, vacuole | 30.17 | 29.45 |
| KXG23010 | Sorghum | cytosol | 32.36 | 29.3 |
| Os12t0161100-00 | Rice | cytosol | 31.14 | 29.16 |
| AT5G37490.1 | Thale cress | cytosol, nucleus, peroxisome | 29.2 | 27.59 |
| AT1G66160.1 | Thale cress | cytosol | 27.98 | 26.68 |
| AT3G18710.1 | Thale cress | cytosol | 26.28 | 26.02 |
| AT5G09800.1 | Thale cress | cytosol | 25.3 | 25.43 |
| AT5G64660.1 | Thale cress | cytosol | 25.79 | 25.24 |
| AT3G02840.1 | Thale cress | mitochondrion | 22.63 | 24.54 |
| AT5G65920.1 | Thale cress | cytosol | 24.09 | 22.3 |
| AT3G49810.1 | Thale cress | cytosol | 23.84 | 21.88 |
| Zm00001d023480_P001 | Maize | cytosol | 28.95 | 21.29 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:818166 | ProteinID:AAD21464.1 | ProteinID:AEC09178.1 |
| EMBL:AK227343 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT2G35930 | EnsemblPlantsGene:AT2G35930 | RefSeq:AT2G35930 |
| TAIR:AT2G35930 | RefSeq:AT2G35930-TAIR-G | EnsemblPlants:AT2G35930.1 | TAIR:AT2G35930.1 | Unigene:At.43241 | EMBL:BT005829 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0010200 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0051865 | InterPro:IPR003613 |
| InterPro:IPR011989 | InterPro:IPR013083 | RefSeq:NP_181137.2 | PFAM:PF04078 | PFAM:PF04564 | PO:PO:0000035 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0006070 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0009005 |
| PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR22849 |
| PANTHER:PTHR22849:SF65 | Symbol:PUB23 | UniProt:Q84TG3 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 |
| UniParc:UPI0000060D5B | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
Coordinates
chr2:-:15082855..15084559
Molecular Weight (calculated)
45825.3 Da
IEP (calculated)
8.046
GRAVY (calculated)
-0.043
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.