Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G070390.1 | golgi |
| HORVU3Hr1G088110.3 | golgi |
| HORVU6Hr1G077710.3 | |
| HORVU7Hr1G036470.3 | |
| HORVU7Hr1G036500.7 | |
| HORVU7Hr1G036540.3 | |
| HORVU7Hr1G036570.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G209000.1 | Wheat | cytosol | 90.07 | 92.2 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 91.22 | 91.44 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 90.99 | 90.99 |
| KXG23010 | Sorghum | cytosol | 63.74 | 60.79 |
| Os12t0161100-00 | Rice | cytosol | 61.2 | 60.36 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.0 | 56.52 |
| Zm00001d023480_P001 | Maize | cytosol | 56.58 | 43.83 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 29.33 | 40.97 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 31.18 | 38.03 |
| PGSC0003DMT400055045 | Potato | cytosol | 18.01 | 36.97 |
| Solyc01g007030.2.1 | Tomato | cytosol | 18.01 | 36.97 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 34.41 | 36.08 |
| KRH22633 | Soybean | cytosol, nucleus | 33.49 | 35.98 |
| KRH26691 | Soybean | cytosol | 30.72 | 34.37 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 31.87 | 33.74 |
| CDY23218 | Canola | cytosol | 30.48 | 33.33 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 31.87 | 33.33 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 31.41 | 33.09 |
| CDX78096 | Canola | cytosol | 29.56 | 32.9 |
| KRH68014 | Soybean | cytosol | 31.87 | 32.86 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 31.18 | 32.85 |
| Solyc01g007010.2.1 | Tomato | cytosol | 30.95 | 32.84 |
| KRH25324 | Soybean | cytosol | 27.48 | 32.78 |
| CDX95337 | Canola | cytosol | 30.95 | 32.76 |
| CDX75084 | Canola | cytosol | 30.72 | 32.76 |
| PGSC0003DMT400054949 | Potato | cytosol | 30.72 | 32.76 |
| Solyc11g068920.1.1 | Tomato | cytosol | 30.48 | 32.67 |
| CDX84168 | Canola | cytosol | 30.48 | 32.51 |
| PGSC0003DMT400050493 | Potato | cytosol | 30.25 | 32.43 |
| KRH72176 | Soybean | cytosol | 31.18 | 32.3 |
| PGSC0003DMT400055051 | Potato | cytosol | 29.33 | 32.23 |
| KRH32856 | Soybean | cytosol | 31.18 | 32.14 |
| PGSC0003DMT400055050 | Potato | cytosol | 29.1 | 32.14 |
| Bra005309.1-P | Field mustard | cytosol | 28.64 | 32.04 |
| Bra017278.1-P | Field mustard | cytosol | 30.48 | 32.04 |
| CDY32070 | Canola | cytosol | 30.48 | 32.04 |
| CDY40422 | Canola | cytosol | 30.48 | 32.04 |
| CDY59599 | Canola | cytosol | 30.25 | 32.03 |
| KRH35744 | Soybean | cytosol | 30.95 | 31.98 |
| KRG96257 | Soybean | cytosol | 30.95 | 31.98 |
| Solyc01g009330.1.1 | Tomato | cytosol | 31.41 | 31.92 |
| AT2G35930.1 | Thale cress | cytosol | 30.25 | 31.87 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 29.79 | 31.77 |
| KRG96268 | Soybean | cytosol | 30.72 | 31.74 |
| Solyc01g007020.2.1 | Tomato | cytosol | 29.79 | 31.62 |
| CDX84587 | Canola | cytosol | 29.79 | 31.54 |
| Bra023044.1-P | Field mustard | cytosol | 29.79 | 31.54 |
| HORVU6Hr1G089590.1 | Barley | plastid | 32.79 | 31.42 |
| CDX79645 | Canola | cytosol | 29.56 | 31.37 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 12.93 | 31.28 |
| HORVU6Hr1G089560.1 | Barley | plastid | 32.56 | 31.26 |
| Bra033430.1-P | Field mustard | cytosol | 30.48 | 31.13 |
| Bra012803.1-P | Field mustard | cytosol | 29.56 | 30.26 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 30.02 | 30.16 |
| AT3G52450.1 | Thale cress | cytosol | 30.25 | 30.11 |
| Bra006925.1-P | Field mustard | cytosol | 30.25 | 30.11 |
| PGSC0003DMT400038197 | Potato | cytosol | 31.18 | 29.74 |
| PGSC0003DMT400054947 | Potato | cytosol | 20.55 | 29.47 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 22.63 | 29.17 |
| HORVU6Hr1G066870.1 | Barley | cytosol | 28.64 | 28.9 |
| PGSC0003DMT400054948 | Potato | cytosol | 18.24 | 27.72 |
| HORVU2Hr1G076490.1 | Barley | mitochondrion | 5.31 | 26.44 |
| HORVU4Hr1G064070.1 | Barley | mitochondrion | 26.1 | 25.68 |
| HORVU7Hr1G040790.2 | Barley | plastid | 26.56 | 23.57 |
| HORVU7Hr1G093780.1 | Barley | cytosol, endoplasmic reticulum, extracellular | 20.79 | 23.02 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 23.33 | 22.3 |
| HORVU4Hr1G066070.1 | Barley | cytosol | 23.33 | 21.96 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 30.95 | 21.68 |
| HORVU6Hr1G077120.1 | Barley | plastid | 25.64 | 21.68 |
| HORVU2Hr1G074130.1 | Barley | plastid | 22.63 | 18.92 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A287TWD7 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G034250 | EnsemblPlants:HORVU6Hr1G034250.1 | InterPro:IPR003613 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF30 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI000B47DB5E | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287TWD7]
Coordinates
chrchr6H:-:159856080..159857826
Molecular Weight (calculated)
45940.8 Da
IEP (calculated)
8.257
GRAVY (calculated)
0.186
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSLASVHME TSGGRTAPHH FACPISLQPM QDPVTAPTGI SYDRRAIERW LADGHATCPV TGRPLSLTDL TPNHTLRRLI LSWHRVSMVA SEPDVAPTSE
101: PDDPEVAVLV AKVMSPTSCP TAGVLCEAAA SAAVNITARR CMVRAGVQWR VLRLLSSCGK TISRAVMPTV EACLGLIDAL DVSADELRPI VSGNHDLVDA
201: LTHVLVTLEN GTYSGGGGNT TRDSAVRLLD SVIESADVAL LERLRPELFR AVTAVVRNRT VSPRATRAAL RVLLNACPNG NGKNRILVAE AGVVHEAIEL
301: ELSSWPSFPS GKSRRVTELV MALLARLCAC AEGRAAVVAH PAGIALVAKR ALRVSAATDT SAVRVLAAVC GRATSPEVVR EMARVGAVGK LCCVLQADCD
401: QDVKETARAV LRMHSGVWCG SPCVSAYLLS RYL
101: PDDPEVAVLV AKVMSPTSCP TAGVLCEAAA SAAVNITARR CMVRAGVQWR VLRLLSSCGK TISRAVMPTV EACLGLIDAL DVSADELRPI VSGNHDLVDA
201: LTHVLVTLEN GTYSGGGGNT TRDSAVRLLD SVIESADVAL LERLRPELFR AVTAVVRNRT VSPRATRAAL RVLLNACPNG NGKNRILVAE AGVVHEAIEL
301: ELSSWPSFPS GKSRRVTELV MALLARLCAC AEGRAAVVAH PAGIALVAKR ALRVSAATDT SAVRVLAAVC GRATSPEVVR EMARVGAVGK LCCVLQADCD
401: QDVKETARAV LRMHSGVWCG SPCVSAYLLS RYL
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.