Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0018g01920.t01 | |
| VIT_16s0022g00510.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35930.1 | VIT_16s0022g00510.t01 | AT4G25200.1 | 21798944 |
| AT3G52450.1 | VIT_09s0018g01920.t01 | AT5G49830.2 | 23170036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 99.51 | 99.51 |
| PGSC0003DMT400055045 | Potato | cytosol | 34.31 | 66.82 |
| Solyc01g007030.2.1 | Tomato | cytosol | 34.31 | 66.82 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 66.67 | 66.18 |
| PGSC0003DMT400055050 | Potato | cytosol | 63.02 | 66.07 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 65.21 | 66.01 |
| PGSC0003DMT400054949 | Potato | cytosol | 64.96 | 65.76 |
| Solyc01g007020.2.1 | Tomato | cytosol | 65.21 | 65.69 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 65.21 | 65.53 |
| PGSC0003DMT400055051 | Potato | cytosol | 62.29 | 64.97 |
| Solyc01g007010.2.1 | Tomato | cytosol | 64.48 | 64.95 |
| KRH68014 | Soybean | cytosol | 65.69 | 64.29 |
| KRH35744 | Soybean | cytosol | 65.21 | 63.96 |
| KRG96257 | Soybean | cytosol | 64.96 | 63.72 |
| KRG96268 | Soybean | cytosol | 64.72 | 63.48 |
| PGSC0003DMT400054947 | Potato | cytosol | 46.47 | 63.24 |
| KRH72176 | Soybean | cytosol | 62.53 | 61.48 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 26.76 | 61.45 |
| PGSC0003DMT400054948 | Potato | cytosol | 42.58 | 61.4 |
| KRH32856 | Soybean | cytosol | 62.53 | 61.19 |
| CDX78096 | Canola | cytosol | 57.42 | 60.67 |
| CDX84168 | Canola | cytosol | 59.37 | 60.1 |
| CDX79645 | Canola | cytosol | 59.61 | 60.05 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 45.26 | 60.0 |
| CDY59599 | Canola | cytosol | 59.61 | 59.9 |
| Bra023044.1-P | Field mustard | cytosol | 59.61 | 59.9 |
| CDX75084 | Canola | cytosol | 59.12 | 59.85 |
| CDX84587 | Canola | cytosol | 59.37 | 59.66 |
| Bra017278.1-P | Field mustard | cytosol | 59.37 | 59.22 |
| CDY40422 | Canola | cytosol | 59.37 | 59.22 |
| AT2G35930.1 | Thale cress | cytosol | 59.12 | 59.12 |
| CDY32070 | Canola | cytosol | 59.12 | 58.98 |
| CDX95337 | Canola | cytosol | 58.64 | 58.92 |
| Bra005309.1-P | Field mustard | cytosol | 55.47 | 58.91 |
| CDY23218 | Canola | cytosol | 56.45 | 58.59 |
| GSMUA_Achr11P... | Banana | cytosol | 52.8 | 58.18 |
| Bra012803.1-P | Field mustard | cytosol | 59.37 | 57.68 |
| GSMUA_Achr10P... | Banana | cytosol | 51.09 | 57.53 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 50.37 | 56.4 |
| Bra006925.1-P | Field mustard | cytosol | 59.61 | 56.32 |
| AT3G52450.1 | Thale cress | cytosol | 58.88 | 55.63 |
| Bra033430.1-P | Field mustard | cytosol | 57.18 | 55.42 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.08 | 54.35 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 46.47 | 53.8 |
| Os04t0686000-01 | Rice | cytosol | 49.63 | 49.39 |
| VIT_06s0009g00370.t01 | Wine grape | cytosol | 46.96 | 47.65 |
| EES06927 | Sorghum | cytosol | 47.93 | 46.46 |
| OQU85086 | Sorghum | cytosol | 48.18 | 46.37 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 47.2 | 46.19 |
| EES13136 | Sorghum | cytosol | 47.69 | 46.01 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 46.96 | 45.95 |
| Os02t0539200-01 | Rice | cytosol | 49.39 | 45.93 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 46.72 | 45.71 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 46.72 | 45.71 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 46.96 | 45.63 |
| VIT_08s0105g00200.t01 | Wine grape | cytosol | 44.53 | 45.07 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 46.23 | 45.02 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 45.99 | 44.79 |
| Os01t0865700-00 | Rice | plastid | 44.28 | 44.72 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 42.09 | 44.13 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 46.23 | 44.08 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 44.77 | 44.02 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 44.53 | 43.88 |
| EES03937 | Sorghum | plastid | 43.55 | 43.87 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 45.99 | 43.85 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 44.53 | 43.78 |
| Zm00001d042738_P001 | Maize | cytosol | 43.31 | 43.63 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 45.74 | 43.62 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 45.74 | 43.62 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 43.8 | 43.58 |
| Zm00001d016730_P001 | Maize | cytosol | 45.99 | 43.35 |
| HORVU6Hr1G089560.1 | Barley | plastid | 46.72 | 42.57 |
| HORVU6Hr1G089590.1 | Barley | plastid | 46.72 | 42.48 |
| Zm00001d003745_P001 | Maize | nucleus | 45.99 | 42.19 |
| KXG26241 | Sorghum | cytosol | 45.99 | 40.91 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 39.9 | 38.41 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 39.66 | 38.17 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 39.17 | 37.7 |
| VIT_01s0011g06140.t01 | Wine grape | mitochondrion | 37.23 | 34.62 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 28.22 | 34.52 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 33.33 | 32.39 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 33.58 | 31.87 |
| VIT_03s0063g00180.t01 | Wine grape | cytosol | 32.12 | 31.81 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 33.33 | 31.71 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 33.09 | 31.41 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 46.96 | 31.23 |
| Os12t0161100-00 | Rice | cytosol | 31.39 | 29.39 |
| KXG23010 | Sorghum | cytosol | 32.12 | 29.07 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 28.71 | 28.64 |
| VIT_04s0044g01460.t01 | Wine grape | cytosol | 25.3 | 26.07 |
| VIT_18s0166g00190.t01 | Wine grape | plasma membrane | 25.3 | 26.0 |
| VIT_18s0001g08790.t01 | Wine grape | cytosol | 26.76 | 24.34 |
| VIT_00s0471g00010.t01 | Wine grape | cytosol | 25.79 | 23.71 |
| Zm00001d023480_P001 | Maize | cytosol | 30.66 | 22.54 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100266002 | wikigene:100266002 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ProteinID:CCB47910 | ProteinID:CCB47910.1 | UniProt:F6H6S4 | EMBL:FN595245 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | EntrezGene:LOC100266002 | wikigene:LOC100266002 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 |
| PANTHER:PTHR22849:SF54 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00021089FE | InterPro:Ubox_domain |
| ArrayExpress:VIT_08s0105g00180 | EnsemblPlantsGene:VIT_08s0105g00180 | EnsemblPlants:VIT_08s0105g00180.t01 | RefSeq:XP_002265439.2 | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H6S4]
Coordinates
chr8:-:7114783..7116201
Molecular Weight (calculated)
45124.3 Da
IEP (calculated)
8.594
GRAVY (calculated)
0.078
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIDVPPFF LCPISLEIMK DPVTVSTGIT YDRESIEKWL FSGKNNTCPA TKQVLSADSD LTPNHTLRRL IQAWCTLHAS NGVERIPTPK IPINKIQIVK
101: LLNDAKSPQL QMKCIGKLRA LAAESDANKR CIESAGAVEF LASIVSKANF TTFEEESDKG LESRSASSEA LSILHYLLLS EAGLKKLVGK NGEFVGCLVR
201: VLQRGNYESR AYAVMLLSSM LQVADPIQLI ALKPEFFVEA VQVLQDHISH QATKATLKLL IEVCPWGRNK VKAVEAGAVS ILTELLLASS EKRACEMILT
301: VLDQLCGCAE GRAELLKHAA GMAIVSKKIL RVSHVASERA VRILYSISKF SATPSVLQEM SQLGVVAKLC LVLQVDCGSR TKEKTRDILR LHARAWKNSP
401: CIPTNLLSSY P
101: LLNDAKSPQL QMKCIGKLRA LAAESDANKR CIESAGAVEF LASIVSKANF TTFEEESDKG LESRSASSEA LSILHYLLLS EAGLKKLVGK NGEFVGCLVR
201: VLQRGNYESR AYAVMLLSSM LQVADPIQLI ALKPEFFVEA VQVLQDHISH QATKATLKLL IEVCPWGRNK VKAVEAGAVS ILTELLLASS EKRACEMILT
301: VLDQLCGCAE GRAELLKHAA GMAIVSKKIL RVSHVASERA VRILYSISKF SATPSVLQEM SQLGVVAKLC LVLQVDCGSR TKEKTRDILR LHARAWKNSP
401: CIPTNLLSSY P
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.