Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G382300.1 | Wheat | cytosol | 94.29 | 93.84 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 91.9 | 91.25 |
| HORVU6Hr1G089590.1 | Barley | plastid | 92.62 | 86.06 |
| HORVU6Hr1G089560.1 | Barley | plastid | 92.38 | 86.03 |
| OQU85086 | Sorghum | cytosol | 75.0 | 73.77 |
| EES06927 | Sorghum | cytosol | 74.05 | 73.35 |
| Os02t0539200-01 | Rice | cytosol | 75.95 | 72.17 |
| Zm00001d016730_P001 | Maize | cytosol | 71.19 | 68.58 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 62.14 | 60.56 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 38.57 | 52.26 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.1 | 50.99 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.52 | 48.82 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.52 | 48.82 |
| CDY32070 | Canola | cytosol | 47.62 | 48.54 |
| CDY40422 | Canola | cytosol | 46.9 | 47.82 |
| Bra017278.1-P | Field mustard | cytosol | 46.9 | 47.82 |
| CDX79645 | Canola | cytosol | 45.71 | 47.06 |
| AT2G35930.1 | Thale cress | cytosol | 45.95 | 46.96 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 45.71 | 46.72 |
| Bra023044.1-P | Field mustard | cytosol | 45.48 | 46.7 |
| CDX84168 | Canola | cytosol | 45.0 | 46.55 |
| CDX75084 | Canola | cytosol | 45.0 | 46.55 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 45.48 | 46.47 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 45.24 | 46.45 |
| CDX84587 | Canola | cytosol | 45.24 | 46.45 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 44.52 | 46.06 |
| Bra005309.1-P | Field mustard | cytosol | 42.14 | 45.74 |
| PGSC0003DMT400054949 | Potato | cytosol | 44.05 | 45.57 |
| Solyc01g007020.2.1 | Tomato | cytosol | 44.05 | 45.34 |
| KRH68014 | Soybean | cytosol | 45.24 | 45.24 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.52 | 45.17 |
| KRH72176 | Soybean | cytosol | 44.76 | 44.98 |
| CDY23218 | Canola | cytosol | 42.38 | 44.95 |
| CDX95337 | Canola | cytosol | 43.57 | 44.74 |
| KRH22633 | Soybean | cytosol, nucleus | 42.86 | 44.66 |
| KRH32856 | Soybean | cytosol | 44.52 | 44.52 |
| CDY59599 | Canola | cytosol | 43.33 | 44.5 |
| PGSC0003DMT400055051 | Potato | cytosol | 41.67 | 44.42 |
| PGSC0003DMT400055050 | Potato | cytosol | 41.43 | 44.39 |
| Solyc01g007010.2.1 | Tomato | cytosol | 43.1 | 44.36 |
| CDX78096 | Canola | cytosol | 40.95 | 44.22 |
| KRH26691 | Soybean | cytosol | 40.48 | 43.93 |
| KRG96257 | Soybean | cytosol | 43.81 | 43.91 |
| KRH35744 | Soybean | cytosol | 43.81 | 43.91 |
| Solyc11g068920.1.1 | Tomato | cytosol | 42.14 | 43.81 |
| KRG96268 | Soybean | cytosol | 43.57 | 43.68 |
| PGSC0003DMT400050493 | Potato | cytosol | 41.9 | 43.56 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 43.33 | 43.54 |
| PGSC0003DMT400054948 | Potato | cytosol | 29.52 | 43.51 |
| Bra033430.1-P | Field mustard | cytosol | 43.57 | 43.16 |
| PGSC0003DMT400054947 | Potato | cytosol | 30.95 | 43.05 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 18.33 | 43.02 |
| Bra006925.1-P | Field mustard | cytosol | 43.57 | 42.07 |
| Solyc01g009330.1.1 | Tomato | cytosol | 42.62 | 42.02 |
| KRH25324 | Soybean | cytosol | 36.19 | 41.87 |
| Bra012803.1-P | Field mustard | cytosol | 42.14 | 41.84 |
| AT3G52450.1 | Thale cress | cytosol | 43.33 | 41.84 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 40.24 | 39.58 |
| PGSC0003DMT400038197 | Potato | cytosol | 41.9 | 38.77 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 32.86 | 31.87 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 31.19 | 29.64 |
| TraesCS2D01G449900.1 | Wheat | cytosol | 28.57 | 28.71 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 27.14 | 28.5 |
| TraesCS6D01G251200.1 | Wheat | cytosol | 29.05 | 28.24 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 41.19 | 27.99 |
| TraesCS6D01G237900.1 | Wheat | extracellular | 26.9 | 27.76 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 30.0 | 27.75 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 28.81 | 27.5 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 26.67 | 25.4 |
| TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 23.1 | 25.39 |
| TraesCS4D01G237600.1 | Wheat | cytosol | 27.38 | 25.05 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 22.14 | 20.53 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6D01G367100 | EnsemblPlants:TraesCS6D01G367100.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:455084963..455086225
Molecular Weight (calculated)
45912.1 Da
IEP (calculated)
8.551
GRAVY (calculated)
-0.008
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSVEVPP YFLCPISLEI MRDPVTLATG ITYDRSSIER WLSDGHNTCP VTQQKLAEAD REATPNHTLR RLTQAWCALH AVERFPTPRP PLDAGRVAAI
101: VEEGHGAGRQ QELAALREIK AIVAENDRNR RCVEATPGAV EFLVSVLRNH ATASKSAEDL LELSLDSPTS TSSPEEDALS VICSLKPSKK SLIRILEKNG
201: DFLDTLVYML RRPSYRSRCY GILLLKAMMS VMEPVRLMAV KTEVVQEVVR VVSDRVSAKA VKAALNVLCR LCPWGRNRVK AVEAGAMTVL VELLLDEGGR
301: HPTELAVVAI DHLCGCAEGR SDLVAHPAGL AVVAKKAMRI SLTTTESAVR ALHAVARHSP TPAVLQEMLA VGVVAKLLLV LQVDAGERAR AKAKELLKMH
401: ARVWKDSPCM QAHLKARYPC
101: VEEGHGAGRQ QELAALREIK AIVAENDRNR RCVEATPGAV EFLVSVLRNH ATASKSAEDL LELSLDSPTS TSSPEEDALS VICSLKPSKK SLIRILEKNG
201: DFLDTLVYML RRPSYRSRCY GILLLKAMMS VMEPVRLMAV KTEVVQEVVR VVSDRVSAKA VKAALNVLCR LCPWGRNRVK AVEAGAMTVL VELLLDEGGR
301: HPTELAVVAI DHLCGCAEGR SDLVAHPAGL AVVAKKAMRI SLTTTESAVR ALHAVARHSP TPAVLQEMLA VGVVAKLLLV LQVDAGERAR AKAKELLKMH
401: ARVWKDSPCM QAHLKARYPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.