Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G232600.1 | Wheat | plastid | 93.21 | 72.25 |
| TraesCS7A01G232500.1 | Wheat | plastid | 89.51 | 70.39 |
| TraesCS7B01G083100.1 | Wheat | plastid | 90.12 | 68.54 |
| TraesCS7B01G083400.1 | Wheat | plastid | 83.95 | 63.85 |
| TraesCS7B01G082900.1 | Wheat | plastid | 76.54 | 62.0 |
| TraesCS7B01G083200.2 | Wheat | plastid | 84.57 | 61.99 |
| HORVU7Hr1G036500.7 | Barley | plastid | 77.16 | 61.27 |
| HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 85.8 | 57.44 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 87.65 | 55.04 |
| TraesCS7B01G083300.1 | Wheat | cytosol | 45.06 | 54.89 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 70.99 | 52.04 |
| TraesCS7B01G083500.1 | Wheat | mitochondrion | 63.58 | 44.21 |
| TraesCS2B01G531300.1 | Wheat | plastid | 40.74 | 37.5 |
| TraesCS6B01G346700.1 | Wheat | mitochondrion | 40.74 | 30.7 |
| EER89430 | Sorghum | plastid | 41.98 | 29.96 |
| OQU76071 | Sorghum | plastid | 37.04 | 29.7 |
| Solyc08g078700.2.1 | Tomato | plastid | 35.19 | 27.14 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 35.19 | 27.01 |
| Zm00001d044874_P001 | Maize | cytosol, plastid | 34.57 | 26.92 |
| TraesCS5B01G123900.1 | Wheat | plastid | 39.51 | 26.78 |
| OQU75612 | Sorghum | plastid | 36.42 | 26.46 |
| OQU75930 | Sorghum | plastid | 36.42 | 26.46 |
| KRH23958 | Soybean | mitochondrion | 33.33 | 25.47 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 31.48 | 25.37 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 30.86 | 24.88 |
| AT5G51440.1 | Thale cress | mitochondrion | 31.48 | 24.29 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 30.86 | 24.04 |
| AT4G25200.1 | Thale cress | mitochondrion | 30.86 | 23.81 |
| EER89431 | Sorghum | plastid | 31.48 | 23.5 |
| KRH39841 | Soybean | mitochondrion | 20.99 | 23.13 |
| CDX89437 | Canola | mitochondrion | 30.25 | 23.0 |
| Bra013872.1-P | Field mustard | mitochondrion | 30.25 | 23.0 |
| CDY03368 | Canola | mitochondrion | 29.63 | 22.54 |
| CDY00476 | Canola | mitochondrion | 22.22 | 22.36 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.63 | 22.22 |
| CDY38862 | Canola | mitochondrion | 26.54 | 21.94 |
| Bra029174.1-P | Field mustard | mitochondrion | 26.54 | 21.83 |
| CDX99920 | Canola | mitochondrion | 19.75 | 20.0 |
| KXG19616 | Sorghum | plastid | 31.48 | 18.96 |
| CDY32630 | Canola | mitochondrion | 19.75 | 18.82 |
| Bra028253.1-P | Field mustard | mitochondrion | 18.52 | 18.63 |
| Os06t0219500-00 | Rice | mitochondrion | 32.1 | 16.83 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 17.9 | 14.87 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 16.67 | 13.78 |
| PGSC0003DMT400012246 | Potato | plastid | 12.35 | 11.76 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 11.73 | 11.31 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G130900.1 | EnsemblPlantsGene:TraesCS7B01G130900 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | PFscan:PS01031 | SEG:seg |
| SUPFAM:SSF49764 | TIGR:cd00298 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:157808553..157809166
Molecular Weight (calculated)
17290.3 Da
IEP (calculated)
4.662
GRAVY (calculated)
-0.336
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVACKAA APAGLLKSGA PVAFCAPHSP AVNAARRPYN TQVKEVNRYD DDDDDYSGRD LVIPSFFSQD VLDPLGAPTS MARLLSMMED VATQTGLSST
101: AGASRLGRWV AKEDDDAVYL KVPMPGLTKE HVTVRADKNI LVIKGEGEKQ PWDGDDDSAV PR
101: AGASRLGRWV AKEDDDAVYL KVPMPGLTKE HVTVRADKNI LVIKGEGEKQ PWDGDDDSAV PR
001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
Arabidopsis Description
HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.