Factsheet for TraesCS6D01G293400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

cytosol: 17211514

gfp PMID: 17211514 doi

G Tardif, NA Kane, H Adam, L Labrie, G Major, P Gulick, F Sarhan, JF Laliberté

Institut Armand-Frappier, Institut national de la recherche scientifique, 531 boulevard des Prairies, Laval, Québec, Canada, H7V 1B7.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G234600.1
TraesCS7B01G132800.1
TraesCS7D01G234600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64350.1	TraesCS7A01G234600.1	AT3G54170.1	9807817
AT5G64350.1	TraesCS7B01G132800.1	AT3G54170.1	9807817
AT5G64350.1	TraesCS7D01G234600.1	AT3G54170.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G314100.1	Wheat	plastid	95.38	96.37
TraesCS6B01G344100.1	Wheat	plastid	95.38	95.38
EES07562	Sorghum	cytosol, mitochondrion, plastid	51.79	90.18
Zm00001d018134_P001	Maize	mitochondrion	50.26	87.5
Os02t0760300-01	Rice	extracellular	49.23	85.71
Solyc01g105710.2.1	Tomato	extracellular	48.21	83.93
PGSC0003DMT400083778	Potato	cytosol	48.21	83.93
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	46.15	80.36
CDY46798	Canola	cytosol	30.26	79.73
KRH21780	Soybean	cytosol, mitochondrion, plastid	45.64	79.46
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	45.13	78.57
AT5G64350.1	Thale cress	cytosol, mitochondrion, plastid	44.1	76.79
CDX84517	Canola	cytosol, mitochondrion, plastid	44.1	76.79
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	42.56	74.11
CDY58272	Canola	cytosol, mitochondrion, plastid	42.56	74.11
HORVU6Hr1G077340.1	Barley	mitochondrion	91.28	73.86
CDX81222	Canola	cytosol, mitochondrion, plastid	42.05	73.21
CDY18714	Canola	endoplasmic reticulum, extracellular	44.62	67.44
KRH10589	Soybean	cytosol	45.64	63.57
GSMUA_Achr5P05550_001	Banana	cytosol, mitochondrion, plastid	37.44	60.33
CDY31323	Canola	extracellular	35.38	52.27
TraesCS1D01G282500.1	Wheat	nucleus	21.03	20.3
TraesCS2D01G276000.2	Wheat	cytosol	27.18	9.03
TraesCS7D01G257300.1	Wheat	cytosol	25.64	8.94
TraesCS5D01G139000.1	Wheat	cytosol	16.41	8.65
TraesCS2D01G050300.1	Wheat	cytosol	25.64	7.7
TraesCS1D01G192100.3	Wheat	cytosol	16.92	5.29

Protein Annotations

EnsemblPlants:TraesCS6D01G293400.1	EnsemblPlantsGene:TraesCS6D01G293400	Gene3D:3.10.50.40	InterPro:IPR001179	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PANTHER:PTHR10516	PANTHER:PTHR10516:SF214	PFAM:PF00254	PFscan:PS50059	SEG:seg	SUPFAM:SSF54534
MapMan:18.12.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:404219206..404222241

Molecular Weight (calculated)

20443.4 Da

IEP (calculated)

9.791

GRAVY (calculated)

-0.281

Length

195 amino acids

Sequence
(BLAST)

001: MGAELLLLGG KVSAGAAAAS GAFAASSSGA GRCVAGGRRL APVQPAALQW RHSSRTRTTT DQKPPRQRCA AAELWRGDAE DGKMGFEKEI LKAGTGPKPV
101: KGQKVTVHCT GYGKDGDLSK KFWSTKDPGQ QPFSFNIGLG SVIKGWDEGV MGMQLGEVAR LTCTPDYAYG SGGFPAWGIQ PNSVLIFEIE VLSAK

Best Arabidopsis Sequence Match ( AT5G64350.1 )
(BLAST)

001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ

Arabidopsis Description

FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.