Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 2
- nucleus 1
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g08940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64350.1 | VIT_17s0000g08940.t01 | AT3G54170.1 | 9807817 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21780 | Soybean | cytosol, mitochondrion, plastid | 86.61 | 86.61 |
| Os02t0760300-01 | Rice | extracellular | 80.36 | 80.36 |
| Zm00001d018134_P001 | Maize | mitochondrion | 80.36 | 80.36 |
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 80.36 | 80.36 |
| CDY46798 | Canola | cytosol | 52.68 | 79.73 |
| Solyc01g105710.2.1 | Tomato | extracellular | 79.46 | 79.46 |
| PGSC0003DMT400083778 | Potato | cytosol | 79.46 | 79.46 |
| EES07562 | Sorghum | cytosol, mitochondrion, plastid | 79.46 | 79.46 |
| Bra024287.1-P | Field mustard | cytosol, mitochondrion, plastid | 78.57 | 78.57 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 78.57 | 78.57 |
| Bra037775.1-P | Field mustard | cytosol, mitochondrion, plastid | 78.57 | 78.57 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 78.57 | 78.57 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 74.11 | 74.11 |
| KRH10589 | Soybean | cytosol | 86.61 | 69.29 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 77.68 | 67.44 |
| GSMUA_Achr5P05550_001 | Banana | cytosol, mitochondrion, plastid | 67.86 | 62.81 |
| CDY31323 | Canola | extracellular | 58.93 | 50.0 |
| TraesCS6A01G314100.1 | Wheat | plastid | 80.36 | 46.63 |
| TraesCS6B01G344100.1 | Wheat | plastid | 80.36 | 46.15 |
| TraesCS6D01G293400.1 | Wheat | cytosol | 80.36 | 46.15 |
| HORVU6Hr1G077340.1 | Barley | mitochondrion | 77.68 | 36.1 |
| VIT_13s0019g01900.t01 | Wine grape | cytosol | 34.82 | 20.74 |
| VIT_00s0260g00070.t01 | Wine grape | cytosol | 17.86 | 19.61 |
| VIT_08s0040g00790.t01 | Wine grape | cytosol | 41.96 | 9.87 |
| VIT_00s0769g00010.t01 | Wine grape | peroxisome | 40.18 | 7.88 |
| VIT_13s0064g00580.t01 | Wine grape | cytosol | 25.0 | 7.67 |
| VIT_18s0001g08830.t01 | Wine grape | cytosol | 33.04 | 6.17 |
| VIT_08s0007g01460.t01 | Wine grape | nucleus | 29.46 | 5.32 |
| VIT_00s0958g00020.t01 | Wine grape | cytosol, peroxisome | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100265806 | wikigene:100265806 | MapMan:18.12.2 | Gene3D:3.10.50.40 | ProteinID:AEQ63296 | ProteinID:AEQ63296.1 |
| ProteinID:CBI34057 | ProteinID:CBI34057.3 | UniProt:D7TU83 | EMBL:FN596248 | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005528 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | GO:GO:0061077 | InterPro:IPR001179 | EMBL:JN559386 | EntrezGene:LOC100265806 |
| wikigene:LOC100265806 | RefSeq:NP_001267979.1 | PFAM:PF00254 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom | PFscan:PS50059 |
| PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 | SUPFAM:SSF54534 | TIGR:TC63075 | UniParc:UPI00015CBC34 | ArrayExpress:VIT_03s0017g01060 |
| EnsemblPlantsGene:VIT_03s0017g01060 | EnsemblPlants:VIT_03s0017g01060.t01 | unigene:Vvi.7903 | : | : | : |
Description
Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7TU83]
Coordinates
chr3:+:16584476..16598889
Molecular Weight (calculated)
12001.4 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.211
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVEKVLLSA GTGPKPVRGQ NVTVHCTGFG KNGDLSQKFW STKDPGQKPF TFKIGQGSVI KGWDEGVMGM QVGEVARLQC SPDYAYGPNG FPAWGIQPNS
101: ALVFEIEVLS LQ
101: ALVFEIEVLS LQ
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [cytosol,plastid,mitochondrion]
SUBAcon: [cytosol,plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.