Factsheet for VIT_00s0958g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0769g00010.t01	Wine grape	peroxisome	100.0	59.89
KRH46622	Soybean	cytosol, nucleus	80.41	50.55
KRG99620	Soybean	cytosol	80.12	50.37
KRH66151	Soybean	nucleus	83.33	48.97
KRH07424	Soybean	cytosol	82.16	48.95
PGSC0003DMT400080935	Potato	cytosol	75.44	44.48
Solyc09g092690.2.1	Tomato	cytosol	75.15	44.23
VIT_18s0001g08830.t01	Wine grape	cytosol	53.22	30.33
VIT_08s0040g00790.t01	Wine grape	cytosol	41.81	30.04
Os01t0562400-01	Rice	mitochondrion	33.63	19.97
Os01t0563000-04	Rice	plasma membrane	33.63	17.64
VIT_13s0064g00580.t01	Wine grape	cytosol	18.42	17.26
VIT_08s0007g01460.t01	Wine grape	nucleus	29.24	16.13
VIT_13s0019g01900.t01	Wine grape	cytosol	4.09	7.45
VIT_00s0260g00070.t01	Wine grape	cytosol	2.05	6.86
Os01t0564300-01	Rice	cytosol, plasma membrane	7.6	6.16
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100249097	wikigene:100249097	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:CBI41091
ProteinID:CBI41091.3	ncoils:Coil	UniProt:D7UEC7	EMBL:FN596832	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100249097	wikigene:LOC100249097	PFAM:PF00254	PFAM:PF00515
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR43811
PANTHER:PTHR43811:SF15	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0001BE5210	ArrayExpress:VIT_00s0958g00020	EnsemblPlantsGene:VIT_00s0958g00020	EnsemblPlants:VIT_00s0958g00020.t01
RefSeq:XP_002268161	RefSeq:XP_002268161.2	SEG:seg	:	:	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7UEC7]

Coordinates

chrUn:-:37148398..37150485

Molecular Weight (calculated)

38579.0 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.715

Length

342 amino acids

Sequence
(BLAST)

001: GFGEKGKPAS GEEGAVPPNA TLEITLELVS WKTVTEVTDD KKVIKKILKE GEGYERPNEG AVVKLKLIGK LQDGTVFLKK GHGEGEDLFE FKTDDEQVID
101: GLDRAVMTMK KGEVALLTIH SDYAFGSSES SQELAVVPPN STVYYEVELE SFVKDKESWD MNTEEKIEAA GKKKEEGNVL FKAGKYARAS KRYEKAAKYI
201: EYDSSFGEEE KKQAKTLKVT CNLNNAACKL KLKDYKEAEK LCTKVLDIQS KNVKALYRRA QAYIHLADLD LAEFDIKKAL EIDPDNRDVK LEYRTLKEKM
301: KEYNKKEAKF YGNMFARMNK LEALETNKAT KEAEPMSIDS KA

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.