CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99620	Soybean	cytosol	97.24	97.24
KRH07424	Soybean	cytosol	85.85	81.36
VIT_00s0958g00020.t01	Wine grape	cytosol, peroxisome	50.55	80.41
KRH66151	Soybean	nucleus	85.29	79.73
KRH58815	Soybean	peroxisome	75.92	72.46
KRH42713	Soybean	cytosol	75.18	71.75
PGSC0003DMT400080935	Potato	cytosol	75.74	71.03
Solyc09g092690.2.1	Tomato	cytosol	75.0	70.22
KRH66687	Soybean	cytosol	53.49	53.89
KRG95045	Soybean	cytosol	12.5	49.28
KRG88759	Soybean	cytosol	51.65	48.28
KRH05556	Soybean	cytosol	51.29	47.86
KRH21780	Soybean	cytosol, mitochondrion, plastid	8.82	42.86
KRH10589	Soybean	cytosol	8.82	34.29
Os01t0562400-01	Rice	mitochondrion	35.66	33.68
KRG97894	Soybean	cytosol	11.58	33.51
KRH30990	Soybean	cytosol	11.58	33.51
Os01t0563000-04	Rice	plasma membrane	36.95	30.83
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	17.65	25.95
KRH62430	Soybean	cytosol	29.41	25.72
KRH75755	Soybean	cytosol, endoplasmic reticulum	29.41	25.72
KRH39924	Soybean	endoplasmic reticulum	17.28	25.41
Os01t0564300-01	Rice	cytosol, plasma membrane	18.93	24.41

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100812632	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	EMBL:ACUP02005352
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G346700	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:0061077	UniProt:I1KZ20	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH46622	ProteinID:KRH46622	ProteinID:KRH46622.1	PFAM:PF00254	PFAM:PF00515
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF386	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000233929A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:46144878..46149871

Molecular Weight (calculated)

60906.4 Da

IEP (calculated)

5.043

GRAVY (calculated)

-0.678

Length

544 amino acids

Sequence
(BLAST)

001: MEEDFDIPGG EEMDLGEDKV GEEREIGSRG LKKKLLKEGQ GWETPEVGDE VQVHYTGTLL DGTKFDSSRD RDSPFSFTLG QGQVIKGWDE GIKTMKKGEN
101: AIFTIPPELA YGESGSPPTI PPNATLQFDV ELLSWTSVKD ICKDGGIFKK IVTEGDKWEN PKDPDEVLVK YEVHLENGKL VAKSDGVEFT VREGHYCPAL
201: SKAVKTMKKG EKVLLTVKPQ YGFGEKGKPE QGDEGAVPPN ATLQITLELV SWKTVSEVTD DKKVIKKILK EGEGYERPNE GAIVKVKLIG KLQDGAAFLK
301: KGHDEEEKLF EFKTDEEQVV DGLDRAVLTM KKGEVALLTI APEYAFGSSE SQQELAVVPP NSTVYFEVEL VSFEKEKESW DLNTEEKLEA AGKKKEEGNV
401: LFKAGKHARA SKRYEKAVKY IEYDSSFGEE EKKQAKTLKV ACNLNNAACK LKLKDYKEAE KLCTKVLDLE STNVKALYRR AQAYMQLTDL DLAELDIKKA
501: LEIDPNNRDV KLEYRTLKEK VKANNRKEAQ FYGNMINKMT KIGS

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.