CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	KRH42483	AT2G01950.1	19000166
AT3G55520.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30990	Soybean	cytosol	98.4	98.4
VIT_13s0019g01900.t01	Wine grape	cytosol	85.64	85.64
Solyc04g011620.2.1	Tomato	nucleus	84.57	85.48
PGSC0003DMT400016257	Potato	nucleus	84.57	85.48
Os05t0458100-01	Rice	nucleus	82.98	83.87
GSMUA_AchrUn_...	Banana	nucleus	82.45	82.45
EES19645	Sorghum	nucleus	81.38	82.26
Os01t0844300-01	Rice	nucleus	78.19	79.46
CDY41214	Canola	nucleus	78.72	77.89
AT3G55520.1	Thale cress	nucleus	78.72	77.89
Bra007173.1-P	Field mustard	nucleus	78.19	77.37
CDY40236	Canola	nucleus	78.19	77.37
TraesCS1D01G282500.1	Wheat	nucleus	79.26	73.76
TraesCS1B01G292400.1	Wheat	nucleus	79.26	73.76
Zm00001d038368_P002	Maize	extracellular	82.98	62.15
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	80.85	55.27
KRH21780	Soybean	cytosol, mitochondrion, plastid	22.87	38.39
KRH10589	Soybean	cytosol	22.87	30.71
KRG95045	Soybean	cytosol	19.15	26.09
KRG99620	Soybean	cytosol	34.04	11.76
KRH46622	Soybean	cytosol, nucleus	33.51	11.58
KRH07424	Soybean	cytosol	35.11	11.5
KRH42713	Soybean	cytosol	34.04	11.23
KRH58815	Soybean	peroxisome	33.51	11.05
KRH66151	Soybean	nucleus	34.04	11.0
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	19.68	10.0
KRH39924	Soybean	endoplasmic reticulum	19.15	9.73
KRH66687	Soybean	cytosol	27.66	9.63
KRG88759	Soybean	cytosol	22.34	7.22
KRH05556	Soybean	cytosol	22.34	7.2
KRH62430	Soybean	cytosol	21.28	6.43
KRH75755	Soybean	cytosol, endoplasmic reticulum	20.74	6.27

Protein Annotations

EntrezGene:100500018	MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:ACUP02010821	EMBL:BT090544	UniProt:C6SZE3
ncoils:Coil	EnsemblPlantsGene:GLYMA_18G037300	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	EnsemblPlants:KRG97894	ProteinID:KRG97894	ProteinID:KRG97894.1	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	SUPFAM:SSF54534
UniParc:UPI0001B15020	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:2912953..2916466

Molecular Weight (calculated)

20073.9 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.491

Length

188 amino acids

Sequence
(BLAST)

001: MGDAIDLTGD GGVIKTIVRK SKADAVGPTE NFPLVDVHYE GTLADTGEVF DTTHEDNTIF SFEIGKGSVI KAWEIAVKTM KVGEVAKITC KPEYAYGSAG
101: SPPDIPPDAT LVFEVELVAC RPRKGSSLGS VSEERARLDE LKKQRELAAA AKEEEKKKRE EAKAAAAARV QAKLEAKKGQ GKGKGKAK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.